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Add parameter to provide multiple sequence alignment directory to Chai-1 #45

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Add parameter to provide multiple sequence alignment directory to Chai-1

Add parameter to provide multiple sequence alignment directory to Chai-1 #45

Run time

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Job Run time
Run pipeline with test data (24.04.2 | test | docker)
2m 18s
Run pipeline with test data (latest-everything | test | docker)
2m 17s
4m 35s