IDOC methods paper

Stores the following resources:

• Metadata of flies used in any experiment: metadata collects biologically relevant information specific to each fly. Can be genotype, gender, treatments, etc Files: metadata.csv and metadata_etho.csv

• R notebook: 1_tidy_datav2.R.ipynb reads the metadata and loads the IDOC data from the database. Saves a tidy_data_wide.csv file

• R scripts: used to process the behavioral data associated to the flies provided in the metadata. Take tidy_data_wide.csv as input

• .svg files: graphs

To generate graphs:

1. Run the R notebook

2. Run the R scripts

bash generate_figures.sh

3. Combine with svg templates

bash combine_figures.sh

Analyze IDOC experiment:

To analyze all experiments and compute a PI for each fly, run

bash scripts/main.sh