remove nf-core lint

.github/workflows/linting.yml

@@ -6,6 +6,8 @@ on:
   push:
     branches:
       - dev
+      - master
+      - main
   pull_request:
   release:
     types: [published]
@@ -28,42 +30,3 @@ jobs:
       - name: Run pre-commit
         run: SKIP=parameter_docs pre-commit run --all-files
 
-  nf-core:
-    runs-on: ubuntu-latest
-    steps:
-      - name: Check out pipeline code
-        uses: actions/checkout@b4ffde65f46336ab88eb53be808477a3936bae11 # v4
-
-      - name: Install Nextflow
-        uses: nf-core/setup-nextflow@v1
-
-      - uses: actions/setup-python@0a5c61591373683505ea898e09a3ea4f39ef2b9c # v5
-        with:
-          python-version: "3.11"
-          architecture: "x64"
-
-      - name: Install dependencies
-        run: |
-          python -m pip install --upgrade pip
-          pip install nf-core
-
-      - name: Run nf-core lint
-        env:
-          GITHUB_COMMENTS_URL: ${{ github.event.pull_request.comments_url }}
-          GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
-          GITHUB_PR_COMMIT: ${{ github.event.pull_request.head.sha }}
-        run: nf-core -l lint_log.txt lint --dir ${GITHUB_WORKSPACE} --markdown lint_results.md
-
-      - name: Save PR number
-        if: ${{ always() }}
-        run: echo ${{ github.event.pull_request.number }} > PR_number.txt
-
-      - name: Upload linting log file artifact
-        if: ${{ always() }}
-        uses: actions/upload-artifact@5d5d22a31266ced268874388b861e4b58bb5c2f3 # v4
-        with:
-          name: linting-logs
-          path: |
-            lint_log.txt
-            lint_results.md
-            PR_number.txt