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MRG: add tests for stdin input to singlesketch #573

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merged 1 commit into from
Jan 6, 2025

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bluegenes
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  • Use needletail parse_fastx_stdin instead of parse_fastx_reader
  • Add test for stdin to singlesketch
  • Fix singlesketch tests that were checking 0 hashes (using scaled=1000 does not work for most small test fasta)

@bluegenes
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ready for review @ctb

@bluegenes bluegenes merged commit fc9c124 into main Jan 6, 2025
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@bluegenes bluegenes deleted the fix-singlesketch-stdin branch January 6, 2025 21:37
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add stdin tests for singlesketch
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