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Add option to preserve reference pixels after IRS2 processing #8255

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merged 5 commits into from
Feb 28, 2024

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melanieclarke
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@melanieclarke melanieclarke commented Feb 1, 2024

Resolves JP-3529

Closes #8254

This PR allows interleaved reference pixels in NIRSpec IRS2 mode to be preserved in the output from the refpix step. This is needed for calibration reductions, to produce new bias reference files, but should not be used for science reductions.

Checklist for maintainers

  • added entry in CHANGES.rst within the relevant release section
  • updated or added relevant tests
  • updated relevant documentation
  • added relevant milestone
  • added relevant label(s)
  • ran regression tests, post a link to the Jenkins job below.
    How to run regression tests on a PR
  • Make sure the JIRA ticket is resolved properly

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codecov bot commented Feb 1, 2024

Codecov Report

All modified and coverable lines are covered by tests ✅

Project coverage is 75.36%. Comparing base (4cc0ac1) to head (882c443).
Report is 4 commits behind head on master.

Additional details and impacted files
@@            Coverage Diff             @@
##           master    #8255      +/-   ##
==========================================
+ Coverage   75.15%   75.36%   +0.20%     
==========================================
  Files         470      474       +4     
  Lines       38604    38839     +235     
==========================================
+ Hits        29014    29271     +257     
+ Misses       9590     9568      -22     
Flag Coverage Δ *Carryforward flag
nightly 77.35% <ø> (-0.04%) ⬇️ Carriedforward from 1c8788a

*This pull request uses carry forward flags. Click here to find out more.

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@hbushouse hbushouse left a comment

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Code updates look fine. Will wait for regression test results before approving.

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The regtest results show failures, but they are all due to another change merged into master since this PR was created, so the PR branch is a bit out of date. The failures are all unrelated.

@hbushouse hbushouse merged commit 970bac9 into spacetelescope:master Feb 28, 2024
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@melanieclarke melanieclarke deleted the preserve_refpix branch March 1, 2024 18:33
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Add option to preserve IRS2 reference pixels
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