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docs/index.rst

@@ -13,10 +13,10 @@ The Roman Space Telescope Calibration Pipeline
    :alt: Nancy Roman Space Telescope
 
 Welcome to the documentation for the Roman calibration software,
-`romancal <https://github.com/spacetelescope/romancal>`__. 
+`romancal <https://github.com/spacetelescope/romancal>`__.
 This package contains the Python software suite for the
 Roman Space Telescope (RST) calibration pipeline, which processes data
-from the Roman Wide-Field Instrument (WFI) by applying various corrections 
+from the Roman Wide-Field Instrument (WFI) by applying various corrections
 to produce science-ready, calibrated output products including fully calibrated
 individual exposures as well as high-level data products (mosaics,
 catalogs, etc.). The tools in this package allow users to run and
@@ -29,7 +29,7 @@ Roman data files in Python.
 If you have questions or concerns regarding the software, please contact the Roman Help
 desk at `Roman Help Desk <https://stsci.service-now.com/roman>`_.
 
---------------------------------	 
+--------------------------------
 
 .. include:: roman/introduction.rst
 
@@ -51,7 +51,7 @@ desk at `Roman Help Desk <https://stsci.service-now.com/roman>`_.
    :caption: Data Products Documentation
 
    roman/data_products/index.rst
-   
+
 .. toctree::
    :caption: RomanCal Package Index
    :maxdepth: 3

docs/roman/data_products/file_naming.rst

@@ -7,8 +7,8 @@ File Naming Schemes
 
 Exposure file names
 ^^^^^^^^^^^^^^^^^^^
-The names of the exposure level data are constructed with information from the 
-science header of the exposure, allowing users to map it to the observation in their corresponding 
+The names of the exposure level data are constructed with information from the
+science header of the exposure, allowing users to map it to the observation in their corresponding
 APT files. The ASDF file naming scheme for the Exposure products is::
 
  r<ppppp><cc><aaa><sss><ooo><vvv>_<gg><s><aa>_<eeeee>_<detector>_<prodType>.fits
@@ -28,13 +28,11 @@ where
  - detector: detector name (e.g. WFI01, WFI02, ...)
  - prodType: product type identifier (e.g. 'uncal', 'cal')
 
-The standard <prodType> for the pipeline are uncal and cal, for the input products and resulting 
-calibrated product. There are optional suffixes for intermediate products that are not routinely 
-produced by the pipeline and are based of the processing level and can include dqinit, saturation, 
+The standard <prodType> for the pipeline are uncal and cal, for the input products and resulting
+calibrated product. There are optional suffixes for intermediate products that are not routinely
+produced by the pipeline and are based of the processing level and can include dqinit, saturation,
 linearity, jump, darkcurrent, rampfit, assignwcs, flat, and photom.
 
 An example Exposure Level product ASDF file name is::
 
  r0000101001001001001_01101_0001_WFI01_cal.asdf
-
-

docs/roman/data_products/product_types.rst

@@ -16,9 +16,9 @@ Exposure Level Data Products
 Exposure Step Data Products
 +++++++++++++++++++++++++++
 
-The following table contain lists of all data product types for exposure pipeline, as given by their file name suffix. The input uncal file and the final cal file 
-are the only files that are produced in the standard processing. All the other are optional (opt) files that can be produced when 
-the user is running the pipeline. The input for each optional step is the output of the preceeding step. 
+The following table contain lists of all data product types for exposure pipeline, as given by their file name suffix. The input uncal file and the final cal file
+are the only files that are produced in the standard processing. All the other are optional (opt) files that can be produced when
+the user is running the pipeline. The input for each optional step is the output of the preceeding step.
 
 +------------------------------------------------+-----------------+--------------------------+------------------+---------------------+---------------------------------------+
 | Pipeline Step                                  | Input           |  Output(s)               | Model            | Units               | Description                           |

docs/roman/data_products/science_products.rst

@@ -14,7 +14,7 @@ resultantdq array is an optional array used to flag missing data in the data For
 process.
 
 +--------------+----------+------------+-------+-------------------------------+
-| data array   |          | Data Type  | Units | Dimensions                    | 
+| data array   |          | Data Type  | Units | Dimensions                    |
 +==============+==========+============+=======+===============================+
 |  data        | Required | uint16     | DN    |  nresultants x nrows x ncols  |
 +--------------+----------+------------+-------+-------------------------------+
@@ -24,29 +24,29 @@ process.
 +--------------+----------+------------+-------+-------------------------------+
 
  - data: 3-D data array containing the raw pixel values. The first two dimensions are equal to
-   the size of the detector readout, with the data from multiple resultants stored along the 3rd 
+   the size of the detector readout, with the data from multiple resultants stored along the 3rd
    axis.
 
- - amp33: This is the reference output from a dedicated SCA Output that reads additional Reference 
-   Pixels on the SCA that are separate from the full-frame array read out by the Science Outputs. 
+ - amp33: This is the reference output from a dedicated SCA Output that reads additional Reference
+   Pixels on the SCA that are separate from the full-frame array read out by the Science Outputs.
    This Output is active in parallel with either the 32 Science Outputs or the 1 Guide Window Output.
 
  - resultantdq: An array that flags the location of any missing data discovered in
    the data formating process.
 
-   
+
 Ramp data: ``ramp``
 ^^^^^^^^^^^^^^^^^^^
 As raw data progress through the :ref:`romancal.pipeline.ExposurePipeline <exposure_pipeline>` pipeline
 they are stored internally in a `~romancal.datamodels.RampModel`.
 This type of data model is serialized to a ``ramp`` type ASDF
 file on disk. The original detector pixel values are converted
-from integer to floating-point data type.  An ERR array and two 
-types of data quality arrays are also added to the product. 
+from integer to floating-point data type.  An ERR array and two
+types of data quality arrays are also added to the product.
 The ASDF file layout is as follows:
 
 +----------------------+----------+------------+-----------+-------------------------------+
-| data array           |          | Data Type  | Units     | Dimensions                    | 
+| data array           |          | Data Type  | Units     | Dimensions                    |
 +======================+==========+============+===========+===============================+
 |  data                | Required | float32    | e :sup:`-`|  nresultants x nrows x ncols  |
 +----------------------+----------+------------+-----------+-------------------------------+
@@ -68,7 +68,7 @@ The ASDF file layout is as follows:
 +----------------------+----------+------------+-----------+-------------------------------+
 
  - data: 3-D data array containing the pixel values. The first two dimensions are equal to
-   the size of the detector readout, with the data from multiple resultants stored along the 3rd 
+   the size of the detector readout, with the data from multiple resultants stored along the 3rd
    axis.
  - pixeldq: 2-D data array containing DQ flags that apply to all groups and all resultants
    for a given pixel (e.g. a hot pixel is hot in all groups and resultants).
@@ -86,8 +86,8 @@ The ASDF file layout is as follows:
 
 .. Note::
    The reference pixels that are on the outer border of the science array are copied to these
-   storage arrays (border_ref_pixel_<position>) at the dq_init step but are retained in 
-   the science array until being trimmed at the ramp fitting step.  
+   storage arrays (border_ref_pixel_<position>) at the dq_init step but are retained in
+   the science array until being trimmed at the ramp fitting step.
 
 
 Calibrated data: ``cal``
@@ -98,7 +98,7 @@ Single exposure calibrated products contain many of the same arrays as the previ
 The calibrated products are the result of an average over all integrations (``cal``).
 
 +----------------------+----------+------------+-------------------------+-------------------------------+
-| data array           |          | Data Type  | Units                   | Dimensions                    | 
+| data array           |          | Data Type  | Units                   | Dimensions                    |
 +======================+==========+============+=========================+===============================+
 |  data                | Required | float32    | e\ :sup:`-`/ s          |  nrows x ncols                |
 +----------------------+----------+------------+-------------------------+-------------------------------+
@@ -138,4 +138,4 @@ The calibrated products are the result of an average over all integrations (``ca
  - border_ref_pix_left: Copy of original border reference pixels, on left (from viewers perspective).
  - border_ref_pix_right: Copy of original border reference pixels, on right (from viewers perspective).
  - border_ref_pix_top: Copy of original border reference pixels, on the top (from viewers perspective).
- - border_ref_pix_bottom: Copy of original border reference pixels, on the bottom (from viewers perspective).
+ - border_ref_pix_bottom: Copy of original border reference pixels, on the bottom (from viewers perspective).

docs/roman/data_products/stages.rst

@@ -4,11 +4,11 @@ Here we describe the structure and content of the most frequently used forms of
 Roman science data products, which are in `ASDF <https://asdf-standard.readthedocs.io/>`_ format. Each type of ASDF
 file is the result of serialization of a corresponding :ref:`DataModel<datamodels>`.
 
-Within the various STScI internal data processing and archiving systems that are used for routine processing of 
-Roman data, there are some different uses of terminology to refer to different levels of processing. 
+Within the various STScI internal data processing and archiving systems that are used for routine processing of
+Roman data, there are some different uses of terminology to refer to different levels of processing.
 The WFI data is converted into ASDF files by Science Data Formatting (SDF), level 0. SDF also inserts data
-from the engineering database and from the proposal database to create the level 1 files. SDF produces one ASDF 
-file per detector and exposure and these level 1 files are used as input to the Exposure Level Processing. The 
+from the engineering database and from the proposal database to create the level 1 files. SDF produces one ASDF
+file per detector and exposure and these level 1 files are used as input to the Exposure Level Processing. The
 output of the exposure level processing is a level 2 file.
 
 +-------------------------------------+-------------------------------------+------------------------------------+

docs/roman/introduction.rst

@@ -1,7 +1,7 @@
 Introduction
 ============
 
-Welcome to the documentation for `romancal <https://github.com/spacetelescope/romancal>`__. 
+Welcome to the documentation for `romancal <https://github.com/spacetelescope/romancal>`__.
 This package contains the calibration software for the WFI instrument on the Nancy Grace Roman
 Space Telescope.