adeded sbatch for diff num cores

suny-downstate-medical-center · Dec 14, 2018 · 45bbbe0 · 45bbbe0
1 parent 6c44568
commit 45bbbe0
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Showing 4 changed files with 52 additions and 1 deletion.
diff --git a/cfg.py b/cfg.py
@@ -21,7 +21,7 @@
 ############################################################
 
 cfg.seeds['stim']=3
-cfg.duration = 60*1e3 #6*1e2   # Duration of the simulation, in ms
+cfg.duration = 1*1e3 #6*1e2   # Duration of the simulation, in ms
 cfg.dt = 0.025          # Internal integration timestep to use
 cfg.verbose = 0     # Show detailed messages
 cfg.seeds['m'] = 123

diff --git a/pd_128.sbatch b/pd_128.sbatch
@@ -0,0 +1,17 @@
+#!/bin/bash 
+#SBATCH --job-name=pd
+#SBATCH -A default
+#SBATCH -t 60:00:00
+#SBATCH --nodes=2
+#SBATCH --ntasks-per-node=64
+#SBATCH -o /home/salvadord/pd/data/pd_scale-1.0_DC-0_TH-0_Balanced-1_1sec_128.run
+#SBATCH -e /home/salvadord/pd/data/pd_scale-1.0_DC-0_TH-0_Balanced-1_1sec_128.err
+#SBATCH [email protected]
+#SBATCH --mail-type=end
+#SBATCH --exclude=compute[17-64000]
+
+source ~/.bashrc
+cd /home/salvadord/pd
+mpirun -np 128 nrniv -python -mpi init.py
+wait
+
diff --git a/pd_256.sbatch b/pd_256.sbatch
@@ -0,0 +1,17 @@
+#!/bin/bash 
+#SBATCH --job-name=pd
+#SBATCH -A default
+#SBATCH -t 60:00:00
+#SBATCH --nodes=4
+#SBATCH --ntasks-per-node=64
+#SBATCH -o /home/salvadord/pd/data/pd_scale-1.0_DC-0_TH-0_Balanced-1_1sec_256.run
+#SBATCH -e /home/salvadord/pd/data/pd_scale-1.0_DC-0_TH-0_Balanced-1_1sec_256.err
+#SBATCH [email protected]
+#SBATCH --mail-type=end
+#SBATCH --exclude=compute[17-64000]
+
+source ~/.bashrc
+cd /home/salvadord/pd
+mpirun -np 256 nrniv -python -mpi init.py
+wait
+
diff --git a/pd_512.sbatch b/pd_512.sbatch
@@ -0,0 +1,17 @@
+#!/bin/bash 
+#SBATCH --job-name=pd
+#SBATCH -A default
+#SBATCH -t 60:00:00
+#SBATCH --nodes=8
+#SBATCH --ntasks-per-node=64
+#SBATCH -o /home/salvadord/pd/data/pd_scale-1.0_DC-0_TH-0_Balanced-1_1sec_512.run
+#SBATCH -e /home/salvadord/pd/data/pd_scale-1.0_DC-0_TH-0_Balanced-1_1sec_512.err
+#SBATCH [email protected]
+#SBATCH --mail-type=end
+#SBATCH --exclude=compute[17-64000]
+
+source ~/.bashrc
+cd /home/salvadord/pd
+mpirun -np 512 nrniv -python -mpi init.py
+wait
+