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Batch #826

Merged
merged 49 commits into from
Jul 17, 2024
Merged

Batch #826

merged 49 commits into from
Jul 17, 2024

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jchen6727
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update batch re: end user suggestion

can now initialize cfg with a dictionary:

from netpyne.batchtools import specs
cfg = specs.SimConfig({'x': [None] * 4})

creates a new cfg such that it already has value x, e.g.

cfg.x = [None, None, None, None]

update to documentation with some minimal working examples (see https://github.com/suny-downstate-medical-center/netpyne/tree/batch/netpyne/batchtools/examples), esp. Rosenbrock w/ coupled parameters, nested parameters, etc.

…(beta version) (suny-downstate-medical-center#819)

* fixed bug in conn, updated test/examples/* to use dynamic pathing

* update CHANGES.md

* updated documentation with new batchtools (beta)
cfg.progressBar = 2 will display all progress bars
cfg.progressBar = 1 will call tqdm with progress bars w/ leave = 0
cfg.progressBar = 0 will disable the progress bar.
jchen6727 and others added 19 commits May 16, 2024 00:17
… loading bar. (suny-downstate-medical-center#821)

* Updated logic, bug fix

cfg.progressBar = 2 will display all progress bars
cfg.progressBar = 1 will call tqdm with progress bars w/ leave = 0
cfg.progressBar = 0 will disable the progress bar.
'sge' or 'sh' are valid options for the 'job_type' argument, not 'shell'
…tionary, fanova example started. batchtools.rst updated
@jchen6727 jchen6727 merged commit c1de7a8 into suny-downstate-medical-center:batch Jul 17, 2024
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jchen6727 added a commit that referenced this pull request Aug 30, 2024
* batch tools subpackage merge into dev,

see PR #818 #822 #826 #827 

see documentation
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3 participants