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@vvbragin vvbragin released this 11 Nov 14:20
· 260 commits to master since this release
v1.0.3
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Learn about vigilant mode.

Version 1.0.3

New features

  • Added ability to load PointCell from saved network

  • Added MultiPlotter class to allow plotting line data on multiple axes

  • Added option to use separate axis for each PSD trace (set axis='multi')

  • Added new Batch method named SBI (Simulation Based Inference) with example folder (sbiOptim)

  • Added support for string functions in properties of cell mechanism, in cell geometry (in netParams.cellParams)

  • Added support for string functions in synMech parameters

  • Massive update of schemas (validator.py and setup.py)

  • More control over POINTER variables through synMechParams (e.g. for gap junctions)

  • Introduced cell variables in cellParams

  • Added plotRateSpectrogram to utils.py

  • Functions prepareCSD() and plotCSD() are now available

  • Updated documentation on install and about

Bug fixes

  • Fixed bug with loading CompartCell with custom mechanisms from saved network

  • Fixed bug with accessing proper sim data file during batch parameters optimization

  • Fixed bug where most batch optimization methods used to misname simulation output file

  • Fixed bug in pop.py: "gridSpacing" is in the list of excludeTags

  • Fixed bug in network.py: in the list "stimStringFuncParams" --> 'del' instead of 'delay', and removed 'i'

  • Fixed bug in conn.py: included "params['preSec'] = connParam.get('preSec')" in gapJunctions

  • Fixed bug in stim.py: 'Loc' with capital letter, for making 'synMechLocFactor'

  • Fixed some misinformation in reference.rst about the subconn

  • Fixed bug in dipole calculation units - changed from mA to uA

  • Fixed bug in conditional logic when gathering LFP / dipoles

  • Allow tuples to specify population's cells in 'include' for plotSpike

  • Cleaned up optuna optim tutorial

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