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Update README.md
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Shinya SUZUKI authored Jan 31, 2019
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Expand Up @@ -79,7 +79,9 @@ sphere_filter -s <strided_length> -w <window_length> <Filtered_coverage_depth_pa

### Estimation

#### MCMC Algorithm
#### Sampling mode

This mode performs sampling from the posterior distribution by (quasi-) Markov chain Monte Carlo algorithm. NUTS sampler is used in default.

```bash
sphere_estimate -m vonmises -M sampling <Estimated_result_path> [<Coverage_depth_path1> <Coverage_depth_path2> ...]
Expand All @@ -106,7 +108,9 @@ The meaning of statistics are followed by Stan. In short,
* Takes a long time
* Requires much memories

#### EM Algorithm
#### Optimizing mode

This mode performs optimizing of the parameters by maximizing the joint posterior. L-BFGS algorithm is used in default.

```bash
sphere_estimate -m vonmises -M optimizing <Estimated_result_path> <Coverage_depth_path1> [<Coverage_depth_path2> ...]
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