Code

Miscellaneous QOL#467

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talmo merged 83 commits intodeveloptalmolab/sleap:developfrom talmo/misc_qoltalmolab/sleap:talmo/misc_qolCopy head branch name to clipboardFeb 8, 2021

+2,602-1,376

Commits

Commits on Feb 3, 2021

• Add high level sleap.load_video method

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• Version printer

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• Merge remote-tracking branch 'origin/develop' into talmo/misc_qol

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• Only use CPU in GUI process to prevent memory preallocation hogging gpu

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• Fix some instance counting and add more info to labels.describe()

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• Add high level config loader

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• Filter suggestions by user labeled state in inference

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• Save viz CLI flag in training will not overwrite config

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• Add missing load_config import

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• Add tracks to labels.describe()

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• Add safe getter for labels

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• Suggestions table will only count user instances

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• Fix safe getter

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• Add percent labeled to suggestions table

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• Tweak status bar message

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• Random flip is now a dropdown to be less confusing

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• Display correct head config when viewing trained model hyperparams

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• Add match_to arg to high level load_file()

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• Add missing reprs/str for main data structures

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• Remove repr test, tweak setup.py

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• Move export package commands to submenu with clearer labels

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• Add auto-increment version in save as... dialog

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• Add version printing and cute welcome to sleap-label launch

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Commits on Feb 4, 2021

• Menu label tweak

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• Fix row selection when navigating suggestions

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• Add console message when configs are loaded/saved

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• Set keyboard shortcuts to more sensible defaults

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• Add option to reset application preferences

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• Add GUI state saving and restore

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• Add buttons to add/remove/clear all suggestions

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• Command tweaks

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• Add marker size selection

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• Add import DLC folder as classmethod

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• Add scale to lf.plot()

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• Add Labels.export() to serialize to analysis HDF5 format

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• Delete viz folder and zip model after training

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• Fix load_model and add more version printing

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• Add basic numpy() methods for Labels and LabeledFrames

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• Fix labeled frame count in model run naming

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• Move post-training actions to their own Trainer methods

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• Add sleap version and other metadata fields to TrainingJobConfig

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• Clean up training CLI args

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• Make trainer run naming consistent with GUI pattern

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• Fix zipped model loading in inference

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• Add progress indicator for dataset package export

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• Remove redundant file delete when canceling export

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• Add cancel button to training monitor

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• Fix validation set splitting when there are few labels

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• Merge remote-tracking branch 'origin/develop' into talmo/misc_qol

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• Move common Predictor functionality to base class

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• Add rich to requirements

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• Add inference progress reporting

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• Black linting

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Commits on Feb 5, 2021

• Inference progress in GUI and cancel buttons for runners

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• Black formatting

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• Add a bunch of methods to Labels

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• Use clear_suggestions() in command

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• Add constructors in LabelsReader for common use cases

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• Tweak inference progress GUI appearance

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• Add filename property to TrainingJobConfig

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• Tweaks to GUI inference runner

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• Black formatting

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• Massive clean up of nn.inference module

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• Fix canceling training

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• Move a few commands to standalone functions

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• Add Export training job package to improve core remote workflow

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• Black formatting

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• Fix random flip augmentation in pipeline building

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• Add split indices to config and support reading from indices

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• Add Labels.extract utility

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Commits on Feb 6, 2021

• Skeleton docstring cleanup and add __len__

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• Fix adding instances when skeleton is empty

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• Move track options to new Tracks menu

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• Add track deletion menu

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Commits on Feb 7, 2021

• Fix instance creation with empty skeleton.

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• Add __len__ to Instance and fix blank instance generation

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• Black formatting

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• Fix test and special case in data split function

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Commits on Feb 8, 2021

• Add Labels.with_user_labels_only()

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• Fix instance filtering and clean up docstrings in LabeledFrame

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• Fix training data readers

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• Fix inference on labels when skeleton is not yet set

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• Lint!!

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