edits to help file for prepare_wham_input

timjmiller · Nov 23, 2020 · 6ef18cd · 6ef18cd
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diff --git a/R/prepare_wham_input.R b/R/prepare_wham_input.R
@@ -146,7 +146,7 @@
 #'     \item{\code{"dir-mult"}}{Dirichlet-multinomial. Effective sample size is estimated by the model (\href{https://www.sciencedirect.com/science/article/abs/pii/S0165783616301941}{Thorson et al. 2017}; \href{https://www.sciencedirect.com/science/article/abs/pii/S016578361830033X}{Thorson 2019}). 1 parameter.}
 #'     \item{\code{"dirichlet"}}{See \href{https://www.sciencedirect.com/science/article/abs/pii/S0165783613003093}{Francis 2014} and \href{https://cdnsciencepub.com/doi/abs/10.1139/cjfas-2015-0532}{Albertsen et al. 2016}. 1 parameter.}
 #'     \item{\code{"logistic-normal-01-infl"}}{Zero-or-one inflated logistic normal. Inspired by zero-one inflated beta in \href{https://www.sciencedirect.com/science/article/abs/pii/S0167947311003628}{Ospina and Ferrari (2012)}. 3 parameters.}
-#'     \item{\code{"logistic-normal-pool0"}}{Logistic normal, pooling zero observations with adjacent age classes. 1 parameter. See \href{https://doi.org/10.1093/icesjms/fsl024}{Schnute and Haigh (2007)} and \href{https://doi.org/10.1016/j.fishres.2013.12.015}{Francis (2014)}.
+#'     \item{\code{"logistic-normal-pool0"}}{Logistic normal, pooling zero observations with adjacent age classes. 1 parameter. See \href{https://doi.org/10.1093/icesjms/fsl024}{Schnute and Haigh (2007)} and \href{https://doi.org/10.1016/j.fishres.2013.12.015}{Francis (2014)}}.
 #'     \item{\code{"logistic-normal-01-infl-2par"}}{Zero-one inflated logistic normal where p0 is a function of binomial sample size. 2 parameters.}
 #'     \item{\code{"logistic-normal-miss0"}}{Logistic normal, treating zero observations as missing. 1 parameter.}
 #'   }

diff --git a/docs/articles/ex1_basics.html b/docs/articles/ex1_basics.html
diff --git a/docs/articles/ex2_CPI_recruitment.html b/docs/articles/ex2_CPI_recruitment.html
diff --git a/docs/articles/ex3_projections.html b/docs/articles/ex3_projections.html
diff --git a/docs/articles/ex4_selectivity.html b/docs/articles/ex4_selectivity.html
diff --git a/docs/articles/ex5_GSI_M.html b/docs/articles/ex5_GSI_M.html
diff --git a/docs/articles/ex6_NAA.html b/docs/articles/ex6_NAA.html
diff --git a/docs/articles/ex7_debug.html b/docs/articles/ex7_debug.html
diff --git a/docs/index.html b/docs/index.html
diff --git a/docs/pkgdown.yml b/docs/pkgdown.yml
@@ -1,4 +1,4 @@
-pandoc: 2.3.1
+pandoc: 1.19.2.4
 pkgdown: 1.6.1
 pkgdown_sha: ~
 articles:
@@ -9,7 +9,7 @@ articles:
   ex5_GSI_M: ex5_GSI_M.html
   ex6_NAA: ex6_NAA.html
   ex7_debug: ex7_debug.html
-last_built: 2020-11-18T01:03Z
+last_built: 2020-11-23T19:44Z
 urls:
   reference: https://timjmiller.github.io/wham//reference
   article: https://timjmiller.github.io/wham//articles

diff --git a/docs/reference/prepare_wham_input.html b/docs/reference/prepare_wham_input.html