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v1.0.7

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@timjmiller timjmiller released this 03 Nov 14:17
· 240 commits to master since this release

Major improvements

  • Improved stability and reliability of one-step-ahead residuals for age compositon observations for most log-likelihoods 037b714.
  • Multivariate Tweedie age composition likelihood option added (Thorson et al. in press) 6f77c16.

Minor improvements

  • Added exported make_osa_residuals function that can make OSA residuals from an object returned by fit_wham where it is also used internally with do.osa=TRUE 1616ade.
  • Added ability to specify different F options for each year of projections to project_wham and prepare_projection f763059
  • Revised vignette on simulation studies f763059

Bug fixes

  • Fix some plotting errors when there are multiple fleets and when there is no age comp for some fleets or indices 83f23ff
  • Fix age comp observations when selectivity is assumed 0 for one or more age classes (needed for osa obs) 7bba974
  • Fix bug in simulation of selectivity random effects with "ar1_y" or "ar1" option 190000c
  • Fix bug in simulation of M random effects with "ar1_y" option 77bbd94
  • Fix bug in check_projF which tests whether the F in projections is being specified correctly when FXSPR or F at catch is specified c643d4b
  • Fix index proportions at age data specification in basic_info issue 64 a3e3afc
  • Fix age of full selection for N1_model = 1 issue 56 865ca3d.