🌲 An easy-to-use and scalable toolkit for genomic alteration signature (a.k.a. mutational signature) analysis and visualization in R https://shixiangwang.github.io/sigminer/reference/index.html

Integrated copy number variation detection toolset

Workflow for Sequenza, cellularity and ploidy

This repository contains the code to run the ASCETS arm-level copy number events caller for targeted sequencing data. ASCETS produces arm-level copy-number variant calls and arm-level weighted average log2 segment means from segmented copy number data.

A fork of the project Excavator2 from sourceforge.

PYRUS is a plotting tool that uses tabix files to create line graphs from bed file data. Utilization of PYRUS includes having a quick plotter for copy number variation within a given chromosomal range of a referenced bed file.

R Package to compare copy number variant (CNV) results from multiple samples/methods

CNV detection for prokaryote genomes using NGS sequencing data

A tool to call CNV (Copy Number Variation) from bulk ATAC-Seq data

CmiRClustFinder v1.0: a tool for identification of CNV co-locolized miRNA, miRNA clusers and genes in TCGA cancer cohorts.

An R package to integrate and analyze CNV calling results from multiple methods in a uniformed and standardized manner

Epicopy R package for CNV identification from methylation microarrays.

Light version of the bioinformatics tool "Patchwork"

Creater: Charlene717

R Package to compare copy number variant (CNV) results from multiple samples or methods

Powerful CNV calls filtering pipeline. Focused on fixed loci calling, before visual inspection.

This is a group project