MONI: A Pangenomic Index for Finding MEMs
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Sep 26, 2024 - C++
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matching-statistics
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Space-efficient variable-order Markov models
markov-model bioinformatics data-structures bwt suffix-tree suffix-link-tree maximal-repeat matching-statistics
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Aug 7, 2019 - C++
Computing matching statistics with compressed data structures
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Oct 8, 2022 - C++
Fast matching statistics in small space
bioinformatics algorithms data-structures bwt comparative-genomics suffix-tree maximal-repeat matching-statistics
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Jan 17, 2022 - C++
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