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Tracking fast flows #295

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Tracking fast flows #295

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c35e98a
Improved kalman tracker
Lollum89 May 15, 2024
1e3b589
fixed issues with AdvancedKalmanTracker. Maybe still issue with numbe…
Lollum89 May 16, 2024
ff1f088
modifying locale for the array and semicolon instead of comma
Lollum89 May 17, 2024
2a97ebb
changed echo for expectedMeasurement from %g back to %.1f
Lollum89 May 17, 2024
d69dfec
Merge pull request #1 from Lollum89/A
Lollum89 May 17, 2024
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3 changes: 3 additions & 0 deletions .vscode/settings.json
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{
"java.configuration.updateBuildConfiguration": "interactive"
}
280 changes: 280 additions & 0 deletions pom copy.xml
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<?xml version="1.0" encoding="UTF-8"?>
<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 https://maven.apache.org/xsd/maven-4.0.0.xsd">
<modelVersion>4.0.0</modelVersion>

<parent>
<groupId>org.scijava</groupId>
<artifactId>pom-scijava</artifactId>
<version>37.0.0</version>
<relativePath />
</parent>

<groupId>sc.fiji</groupId>
<artifactId>TrackMate</artifactId>
<version>7.12.2-SNAPSHOT</version>

<name>TrackMate</name>
<description>TrackMate plugin for Fiji.</description>
<url>https://imagej.net/plugins/trackmate</url>
<inceptionYear>2010</inceptionYear>
<organization>
<name>TrackMate</name>
<url>https://github.com/trackmate-sc</url>
</organization>
<licenses>
<license>
<name>GNU General Public License v3+</name>
<url>https://www.gnu.org/licenses/gpl.html</url>
<distribution>repo</distribution>
</license>
</licenses>

<developers>
<developer>
<id>tinevez</id>
<name>Jean-Yves Tinevez</name>
<url>https://imagej.net/people/tinevez</url>
<roles>
<role>founder</role>
<role>lead</role>
<role>developer</role>
<role>debugger</role>
<role>reviewer</role>
<role>support</role>
<role>maintainer</role>
</roles>
</developer>
<developer>
<id>ctrueden</id>
<name>Curtis Rueden</name>
<url>https://imagej.net/people/ctrueden</url>
<roles>
<role>maintainer</role>
</roles>
</developer>
</developers>
<contributors>
<contributor>
<name>Nick Perry</name>
<url>https://imagej.net/people/nickp</url>
<roles><role>founder</role></roles>
<properties><id>nickp</id></properties>
</contributor>
<contributor>
<name>Johannes Schindelin</name>
<url>https://imagej.net/people/dscho</url>
<roles><role>founder</role></roles>
<properties><id>dscho</id></properties>
</contributor>
<contributor><name>Gary Baker</name></contributor>
<contributor>
<name>Albert Cardona</name>
<url>https://imagej.net/people/acardona</url>
<properties><id>acardona</id></properties>
</contributor>
<contributor>
<name>Barry DeZonia</name>
<url>https://imagej.net/people/bdezonia</url>
<properties><id>bdezonia</id></properties>
</contributor>
<contributor>
<name>Stefan Helfrich</name>
<url>https://imagej.net/people/stelfrich</url>
<properties><id>stelfrich</id></properties>
</contributor>
<contributor>
<name>Mark Hiner</name>
<url>https://imagej.net/people/hinerm</url>
<properties><id>hinerm</id></properties>
</contributor>
<contributor>
<name>Hadrien Mary</name>
<url>https://imagej.net/people/hadim</url>
<properties><id>hadim</id></properties>
</contributor>
<contributor>
<name>Tobias Pietzsch</name>
<url>https://imagej.net/peoplel/pietzsch</url>
<properties><id>tpietzsch</id></properties>
</contributor>
<contributor><name>Barak Naveh</name></contributor>
<contributor><name>Chen Ye</name></contributor>
<contributor>
<name>Robert Haase</name>
<url>https://imagej.net/people/haesleinhuepf</url>
<properties><id>haesleinhuepf</id></properties>
</contributor>
<contributor>
<name>Jan Eglinger</name>
<url>https://imagej.net/people/imagejan</url>
<properties><id>imagejan</id></properties>
</contributor>
</contributors>

<mailingLists>
<mailingList>
<name>Image.sc Forum</name>
<archive>https://forum.image.sc/tag/trackmate</archive>
</mailingList>
</mailingLists>

<scm>
<connection>scm:git:https://github.com/trackmate-sc/TrackMate</connection>
<developerConnection>scm:git:[email protected]:trackmate-sc/TrackMate</developerConnection>
<tag>HEAD</tag>
<url>https://github.com/trackmate-sc/TrackMate</url>
</scm>
<issueManagement>
<system>GitHub Issues</system>
<url>https://github.com/trackmate-sc/TrackMate/issues</url>
</issueManagement>
<ciManagement>
<system>GitHub Actions</system>
<url>https://github.com/trackmate-sc/TrackMate</url>
</ciManagement>

<properties>
<package-name>fiji.plugin.trackmate</package-name>
<license.licenseName>gpl_v3</license.licenseName>
<license.copyrightOwners>TrackMate developers.</license.copyrightOwners>
<license.projectName>TrackMate: your buddy for everyday tracking.</license.projectName>

<!-- NB: Deploy releases to the SciJava Maven repository. -->
<releaseProfiles>sign,deploy-to-scijava</releaseProfiles>

<!-- NB: Use ImgLib2 style code formatting (https://github.com/scijava/scijava-coding-style) -->
<scijava.coding-style>imglib2</scijava.coding-style>

<fontchooser.version>2.5.2</fontchooser.version>
<javaGeom.version>0.11.1</javaGeom.version>
<imglib2.version>6.1.0</imglib2.version>
</properties>

<dependencies>
<!-- Fiji dependencies -->
<dependency>
<groupId>sc.fiji</groupId>
<artifactId>fiji-lib</artifactId>
</dependency>

<!-- ImageJ dependencies -->
<dependency>
<groupId>net.imagej</groupId>
<artifactId>ij</artifactId>
</dependency>
<dependency>
<groupId>net.imagej</groupId>
<artifactId>imagej-common</artifactId>
</dependency>

<!-- ImgLib2 dependencies -->
<dependency>
<groupId>net.imglib2</groupId>
<artifactId>imglib2</artifactId>
</dependency>
<dependency>
<groupId>net.imglib2</groupId>
<artifactId>imglib2-algorithm</artifactId>
</dependency>
<dependency>
<groupId>net.imglib2</groupId>
<artifactId>imglib2-algorithm-gpl</artifactId>
</dependency>
<dependency>
<groupId>net.imglib2</groupId>
<artifactId>imglib2-ij</artifactId>
</dependency>
<dependency>
<groupId>net.imglib2</groupId>
<artifactId>imglib2-realtransform</artifactId>
</dependency>
<dependency>
<groupId>net.imglib2</groupId>
<artifactId>imglib2-roi</artifactId>
</dependency>

<!-- SciJava dependencies -->
<dependency>
<groupId>org.scijava</groupId>
<artifactId>scijava-common</artifactId>
</dependency>
<dependency>
<groupId>org.scijava</groupId>
<artifactId>scijava-listeners</artifactId>
</dependency>

<!-- Other dependencies -->
<dependency>
<groupId>com.github.vlsi.mxgraph</groupId>
<artifactId>jgraphx</artifactId>
</dependency>
<dependency>
<groupId>com.google.code.gson</groupId>
<artifactId>gson</artifactId>
</dependency>
<dependency>
<groupId>com.itextpdf</groupId>
<artifactId>itextpdf</artifactId>
</dependency>
<dependency>
<groupId>com.opencsv</groupId>
<artifactId>opencsv</artifactId>
</dependency>
<dependency>
<groupId>gov.nist.math</groupId>
<artifactId>jama</artifactId>
</dependency>
<dependency>
<groupId>net.sf.trove4j</groupId>
<artifactId>trove4j</artifactId>
</dependency>
<dependency>
<groupId>org.apache.xmlgraphics</groupId>
<artifactId>batik-dom</artifactId>
</dependency>
<dependency>
<groupId>org.apache.xmlgraphics</groupId>
<artifactId>batik-svggen</artifactId>
</dependency>
<dependency>
<groupId>org.jdom</groupId>
<artifactId>jdom2</artifactId>
</dependency>
<dependency>
<groupId>org.jfree</groupId>
<artifactId>jfreechart</artifactId>
</dependency>
<dependency>
<groupId>org.jgrapht</groupId>
<artifactId>jgrapht-core</artifactId>
</dependency>
<dependency>
<groupId>org.apache.commons</groupId>
<artifactId>commons-math3</artifactId>
</dependency>
<dependency>
<groupId>math.geom2d</groupId>
<artifactId>javaGeom</artifactId>
<version>${javaGeom.version}</version>
</dependency>
<dependency>
<groupId>org.drjekyll</groupId>
<artifactId>fontchooser</artifactId>
<version>${fontchooser.version}</version>
</dependency>

<!-- Test dependencies -->
<dependency>
<groupId>junit</groupId>
<artifactId>junit</artifactId>
<scope>test</scope>
</dependency>
</dependencies>

<repositories>
<repository>
<id>scijava.public</id>
<url>https://maven.scijava.org/content/groups/public</url>
</repository>
</repositories>
</project>
8 changes: 4 additions & 4 deletions pom.xml
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</parent>

<groupId>sc.fiji</groupId>
<artifactId>TrackMate</artifactId>
<version>7.12.2-SNAPSHOT</version>
<artifactId>LP_TrackMate</artifactId>
<version>Test_1</version>

<name>TrackMate</name>
<description>TrackMate plugin for Fiji.</description>
<name>LP_TrackMate</name>
<description>LP Modified TrackMate plugin for Fiji.</description>
<url>https://imagej.net/plugins/trackmate</url>
<inceptionYear>2010</inceptionYear>
<organization>
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