labelling leaves with sample names?

[chlangley]

Is there a direct way to label leaf nodes with sample names?

[petrelharp]

Do you mean in the tree sequence data structure itself or when you make a picture for output, e.g., with .draw_svg( )? For the latter we've got an example here. For the former, we could add metadata - that would probably make a good example? (Does tsinfer already do this?)

[chlangley]

Sorry, I should be much clearer.y
I have an a simplify inferred tree, as in reduced_tree = inferred_ts.simplify([0,...
using reduced_tree.draw_svg("path2output.svg", ,x_lim=(62543294, 62550000))

[chlangley]

That looks quite helpful. thanks.