Adding notebook for Dask computation on Coiled Cluster #17
Conversation
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Without GPUi, segmentation takes around 20 minutes. So reading the segmentation from files till the GPU cluster is not ready.
thewtex
approved these changes
May 9, 2022
| girder_client | ||
| git+https://github.com/uncbiag/mermaid.git | ||
| git+https://github.com/uncbiag/easyreg.git | ||
| git+https://github.com/PranjalSahu/OAI_analysis_2.git#egg=oai_package |
There was a problem hiding this comment.
my vote is for a PyPI package named oai-analysis ☑️
thewtex
pushed a commit
that referenced
this pull request
Dec 8, 2023
Adding notebook for Dask computation on Coiled Cluster Former-commit-id: 9c85019
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
Moved the dask-related methods to the dask_processing module for better readability.
Adding coiled_requirements.txt for future reference.
Two commits have code related to using the segmentation model however, it is removed in later commits as without GPU it is taking around 20 minutes to segment. That code will act as a reference once the GPU cluster is ready. Currently reading the segmented probability map from S3.