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Is your feature request related to a problem? Please describe.
Certain transcripts have more than one stop codon. This leads to issues when trying to predict the effect using hgvs-rs (the issue already is in the Python-based hgvs). In this case, a prediction could still be made by ignoring the first stop codon. Of course, a note needs to be added.
Describe the solution you'd like
Implement appropriate behaviour to ignore the first stop codon where appropriate.
Describe alternatives you've considered
N/A
Additional context
Mehari log messages look like:
2023-10-21T07:20:59.106574Z DEBUG No consequences for VcfVariant { chromosome: "3", position: 49395540, reference: "G", alternative: "" } on NM_000581.4 (hgvs_p=p.?) - adding gene_variant;most likely the transcript has multiple stop codons and the variant lies behind the first.
The text was updated successfully, but these errors were encountered:
Is your feature request related to a problem? Please describe.
Certain transcripts have more than one stop codon. This leads to issues when trying to predict the effect using
hgvs-rs
(the issue already is in the Python-basedhgvs
). In this case, a prediction could still be made by ignoring the first stop codon. Of course, a note needs to be added.Describe the solution you'd like
Implement appropriate behaviour to ignore the first stop codon where appropriate.
Describe alternatives you've considered
N/A
Additional context
Mehari log messages look like:
The text was updated successfully, but these errors were encountered: