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vast-tools v1.1.0
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@mirimia mirimia released this 22 Jun 22:08
· 640 commits to master since this release
v1.1.0
4e772f2

New

  • It is now possible to generate the INCLUSION_LEVELS_FULL table from combine for the newest mouse (mm10) and human (hg38) assemblies. For this, simply provide the assembly version using the -a [hg19|hg38|mm9|mm10] option. The default is still mm9/hg38.
    • Note: combine uses a conversion file for each species that is now included in a new VASTDB version (vastdb.hsa.22.06.16 and vastdb.mmu.22.06.16). If you already have VASTDB installed, the conversion files are also available for download in http://vastdb.crg.eu/libs/PATCH_mm10-hg38.tar.gz. They should be placed in the corresponding VASTDB/Sp/FILES/ folder.
    • Note: vast-tools still operates with mm9 and hg19 VASTDB versions. Only the coordinates are converted in the final output table.

Updates and fixes

  • Fix in merge: incorrect behavior to avoid overwriting merged files if already present.
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