ENH: Switch to version 1.0 of config file format, fix #685 #345 #748#750

Merged

NickleDave merged 183 commits intomainfrom update-config-add-dataset-table

May 5, 2024

+3,455-2,383

Commits on May 1, 2024

WIP: Add src/vak/config/dataset.py
NickleDave
committed
Add module-level docstring + type annotations in src/vak/config/parse.py
NickleDave
committed
WIP: Fix how cli.prep adds dataset path to toml config file
NickleDave
committed
Change table names in src/vak/config/valid.toml
NickleDave
committed
Rename section -> table in config/parse.py
NickleDave
committed
In cli/prep change 'section' -> 'table' and lowercase table names
NickleDave
committed
In config/config.py, change 'section' -> 'table' and lowercase table names
NickleDave
committed
Change '[PREP]' -> '[vak.prep]' in config/prep.py
NickleDave
committed
WIP: Change table names in config files in tests/data_for_tests/configs
NickleDave
committed
Make tomlkit a dependency in pyproject.toml, drop toml
NickleDave
committed
Change config/parse.py to use tomlkit
NickleDave
committed
Update example configs in doc/toml/
NickleDave
committed
Add link to example config files in docs, in error messages in config/validators.py
NickleDave
committed
Remove 'spect_params' from REQUIRED_OPTIONS in config/parse.py, this is not a top-level table and will be an attribute of prep instead
NickleDave
committed
Rename 'config_toml' -> 'config_dict' in config/parse.py
NickleDave
committed
Fix function _validate_tables_arg_convert_list in config/parse.py
NickleDave
committed
Fix error message formatting in src/vak/config/validators.py
NickleDave
committed
Add ModelConfig class to config/model.py, add type annotations, fix config_from_toml_dict to look in specific section
NickleDave
committed
Fixup fixing config_from_toml_dict to look in specific section
NickleDave
committed
Rewrite config/eval.py with 'modern' attrs
NickleDave
committed
Fixup rewrite config/eval with 'modern attrs
NickleDave
committed
Rewrite config/learncurve.py with 'modern' attrs
NickleDave
committed
Rewrite config/predict.py with 'modern' attrs
NickleDave
committed
Rewrite config/prep.py with 'modern' attrs
NickleDave
committed
Rewrite config/train.py with 'modern' attrs
NickleDave
committed
Rename Dataset -> DatasetConfig in config/dataset.py
NickleDave
committed
Add are_table_options_valid to config/validators.py, will be used by classmethods from_config_dict
NickleDave
committed
WIP: Add from_config_dict classmethod to EvalConfig
NickleDave
committed
WIP: Add tests/test_config/test_dataset.py
NickleDave
committed
Make fixes to ModelConfig class, fix circular imports in config/model.py module
NickleDave
committed
Write tests in tests/test_config/test_dataset.py
NickleDave
committed

Commits on May 2, 2024

Commits on May 3, 2024

Commits on May 4, 2024

Commits on May 5, 2024