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add .csv and .tsv result files
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xiezhq committed Mar 11, 2021
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10 changes: 6 additions & 4 deletions README.md
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Expand Up @@ -148,6 +148,8 @@ Let's try an example, NC_012624.fna.

- After ISEScan finish running, you can find the output files in prediction directory:
- NC_012624.fna.sum: the summarization of IS copies for each IS family
- NC_012624.fna.csv: details about IS copies in NC_012624, one copy per line, comma-separated tabular table
- NC_012624.fna.tsv: details about IS copies in NC_012624, one copy per line, tab-separated tabular table
- NC_012624.fna.raw: details about IS copies in NC_012624, one copy per line
- NC_012624.fna.gff: listing each IS copy and its TIR, gff3 format
- NC_012624.fna.is.fna: the nucleic acid sequence of each IS copy, fasta format
Expand All @@ -164,10 +166,10 @@ Let's try an example, NC_012624.fna.
- bps4IS: length of sequence segments spaned by IS elements in a sequence
- dnaLen: length of the specific sequence

- Details about NC_012624.fna.raw:
- The first line is title line with the column identifier for each column.
- The lines following the 2nd line are the main content of NC_012624.fna.raw file, one IS copy per line.
- Columns in NC_012624.fna.raw:
- Details about NC_012624.fna.csv (NC_012624.fna.tsv, NC_012624.fna.raw):
- The first row is header line listing column names.
- The rows after the first row are the main content of NC_012624.fna.csv file, one IS copy per line.
- Columns in NC_012624.fna.csv (NC_012624.fna.tsv, NC_012624.fna.raw):
- seqID: sequence identifier
- family: family name of IS element
- cluster: Tpase cluster
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