v1.0

• add the multiple threads function -t
• add option --chrs to specify chromosomes (#3)
• add a specified script (utility/GCI_score.py) to compute GCI score with just depth files without running GCI.py again (#5)
• add a specified script (utility/convert_samtools_depth.py) to convert depth file generated by samtools depth into the format compatible with (utility/plot_depth.py) (#6)
• add the summarized GCI score for multiple specific regions for the option -R (#7)
• add another some small features and fix some bugs

GCI-0.4

• GCI can generate scores for regions (#5)
• plot_depth.py can generate plots for specific regions instead of plotting all chromosomes (#4, #5)
• Added logs for debugging
• Edited some details for depth plots
  ...

Note: This release is not the same as the v0.4 tag, so please download the GCI-v0.4.zip instead of git clone.

GCI-0.3

• edit the window size for plotting (#4)
• modify the abnormal return value by python

GCI-0.2

• edited the workflow of plotting function
  • improved the presentation of x axis
  • added the option -R for zooming in specific regions (#3)
  • other updates
• output the gzipped depth file by default for subsequent plotting rather than rerunning GCI (#1)

GCI-0.1

v0.1

Update README.md