Note

Due to the KEGG api update, the created dataset will slightly differ from the original dataset used in the paper. However, we confirmed that this change did not affect the result and discussion. To reproduce the exact same result, please use the original dataset under data/.

Setup

pip install -r requirements.txt

Data

Please download FAERS REAC & DRUG tables (2004Q1-2019Q2) under data/.

Run

# preprocess
bash ./src/data/data.sh

# MF
python ./src/models/mf.py

# external test for MF
python ./src/models/mf_external_test.py

# sider for MF
python ./src/models/mf_sider.py