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Merge pull request fli-iam#2206 from youennmerel/fli-iam#2194
[fli-iam#2194] Generate Tags from "organ" dataset properties
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17 changes: 17 additions & 0 deletions
17
docker-compose/database/db-changes/datasets/0049_create_tables_tags.sql
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,17 @@ | ||
| CREATE TABLE `study_tag` ( | ||
| `id` bigint(20) NOT NULL, | ||
| `color` varchar(255) DEFAULT NULL, | ||
| `name` varchar(255) DEFAULT NULL, | ||
| `study_id` bigint(20) DEFAULT NULL, | ||
| PRIMARY KEY (`id`), | ||
| KEY `FKboew1v3lqqa0afxnigq4fxhf3` (`study_id`), | ||
| CONSTRAINT `FKboew1v3lqqa0afxnigq4fxhf3` FOREIGN KEY (`study_id`) REFERENCES `study` (`id`) | ||
| ); | ||
| CREATE TABLE `dataset_tag` ( | ||
| `dataset_id` bigint(20) NOT NULL, | ||
| `study_tag_id` bigint(20) NOT NULL, | ||
| KEY `FKkh92b0ddi9nxrevqkdmvqpcm3` (`study_tag_id`), | ||
| KEY `FKd0dkfmqchgw18bxirml5an8ex` (`dataset_id`), | ||
| CONSTRAINT `FKd0dkfmqchgw18bxirml5an8ex` FOREIGN KEY (`dataset_id`) REFERENCES `dataset` (`id`), | ||
| CONSTRAINT `FKkh92b0ddi9nxrevqkdmvqpcm3` FOREIGN KEY (`study_tag_id`) REFERENCES `study_tag` (`id`) | ||
| ); |
48 changes: 48 additions & 0 deletions
48
docker-compose/database/oneshot-updates/tag_ofsep_organs.sql
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,48 @@ | ||
| -- Create study_tags in studies for all relevant studies | ||
|
|
||
| INSERT INTO studies.study_tag (color, name, study_id) | ||
| SELECT DISTINCT '#e74c3c', 'volume.organ:brain', proc.study_id | ||
| FROM datasets.dataset_property prop | ||
| INNER JOIN datasets.dataset_processing proc ON proc.id = prop.dataset_processing_id | ||
| WHERE prop.name = 'volume.organ' AND prop.value = 'brain'; | ||
|
|
||
| INSERT INTO studies.study_tag (color, name, study_id) | ||
| SELECT DISTINCT '#27ae60', 'volume.organ:spine', proc.study_id | ||
| FROM datasets.dataset_property prop | ||
| INNER JOIN datasets.dataset_processing proc ON proc.id = prop.dataset_processing_id | ||
| WHERE prop.name = 'volume.organ' AND prop.value = 'spine'; | ||
|
|
||
| INSERT INTO studies.study_tag (color, name, study_id) | ||
| SELECT DISTINCT '#198bda', 'volume.organ:null', proc.study_id | ||
| FROM datasets.dataset_property prop | ||
| INNER JOIN datasets.dataset_processing proc ON proc.id = prop.dataset_processing_id | ||
| WHERE prop.name = 'volume.organ' AND prop.value = 'null'; | ||
|
|
||
| -- Copy studies study_tags to datasets study_tags | ||
|
|
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| INSERT INTO datasets.study_tag (id, color, name, study_id) | ||
| SELECT id, color, name, study_id | ||
| FROM studies.study_tag; | ||
|
|
||
| -- Create dataset_tag for all relevant dataset | ||
|
|
||
| INSERT INTO dataset_tag (dataset_id, study_tag_id) | ||
| SELECT DISTINCT prop.dataset_id, tag.id | ||
| FROM dataset_property prop | ||
| INNER JOIN dataset_processing proc ON proc.id = prop.dataset_processing_id | ||
| INNER JOIN study_tag tag ON tag.study_id = proc.study_id AND tag.name = 'volume.organ:brain' | ||
| WHERE prop.name = 'volume.organ' AND prop.value = 'brain'; | ||
|
|
||
| INSERT INTO dataset_tag (dataset_id, study_tag_id) | ||
| SELECT DISTINCT prop.dataset_id, tag.id | ||
| FROM dataset_property prop | ||
| INNER JOIN dataset_processing proc ON proc.id = prop.dataset_processing_id | ||
| INNER JOIN study_tag tag ON tag.study_id = proc.study_id AND tag.name = 'volume.organ:spine' | ||
| WHERE prop.name = 'volume.organ' AND prop.value = 'spine'; | ||
|
|
||
| INSERT INTO dataset_tag (dataset_id, study_tag_id) | ||
| SELECT DISTINCT prop.dataset_id, tag.id | ||
| FROM dataset_property prop | ||
| INNER JOIN dataset_processing proc ON proc.id = prop.dataset_processing_id | ||
| INNER JOIN study_tag tag ON tag.study_id = proc.study_id AND tag.name = 'volume.organ:null' | ||
| WHERE prop.name = 'volume.organ' AND prop.value = 'null'; |
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