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cschu authored Apr 26, 2024
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![cayman logo](cayman_logo_small.png)
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Cayman (<ins>C</ins>arbohydrate <ins>a</ins>ctive enz<ins>y</ins>mes profiling of <ins>m</ins>et<ins>a</ins>ge<ins>n</ins>omes) is a command-line profiling tool for profiling CAZyme abundances in metagenomic datasets. It takes as input (preferably) cleaned -- quality-filtered and host-filtered -- metagenomic shotgun reads and produces a matrix of CAZyme
<img align="left" src="https://github.com/zellerlab/cayman/blob/main/cayman_logo_small.png" width="250">

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**Cayman** (<ins>C</ins>arbohydrate <ins>a</ins>ctive enz<ins>y</ins>mes profiling of <ins>m</ins>et<ins>a</ins>ge<ins>n</ins>omes) is a command-line profiling tool for profiling CAZyme abundances in metagenomic datasets. It takes as input (preferably) cleaned -- quality-filtered and host-filtered -- metagenomic shotgun reads and produces a matrix of CAZyme
Reads-Per-Kilobase-Million (RPKM) abundances for your sample. Cayman makes heavy use of the functional profiling library [`gqlib`](https://github.com/cschu/gqlib).

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### Prerequisites

#### Dependencies
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