Merge branch 'master' into refactor/next_big_cleanup_20210428

zellerlab · May 6, 2021 · 0db1376 · 0db1376
2 parents 751383b + e420b3f
commit 0db1376
Showing 1 changed file with 2 additions and 0 deletions.
diff --git a/stag/taxonomy.py b/stag/taxonomy.py
@@ -24,6 +24,8 @@ def load_from_file(self):
                 # vals = line.rstrip().replace("/","-").split("\t")
                 try:
                     gene, lineage = row
+                    # we solve #10
+                    lineage = lineage.replace("/","-")
                 except:
                     raise ValueError(f"line {line_i} is not properly formatted, expecting gene\tlineage.. :\n{row}")
                 lineage = lineage.split(";")