Solve issue #10 in 0.8.1

zellerlab · Apr 28, 2021 · 1bfc964 · 1bfc964
1 parent f9d7795
commit 1bfc964
Showing 1 changed file with 2 additions and 1 deletion.
diff --git a/stag/create_db.py b/stag/create_db.py
@@ -54,7 +54,8 @@ def load_alignment_from_file(file_name):
     # add correct values
     with open(file_name, "r") as f:
         for pos, line in enumerate(f):
-            vals = line.rstrip().split("\t")
+            # vals = line.rstrip().split("\t") check issue #10 why we replace the "/"
+            vals = line.rstrip().replace("/","-").split("\t")
             alignment.iloc[pos] = np.array([x == "1" for x in vals[1:]])
 
     logging.info('   LOAD_AL: Number of genes: %s', str(len(list(alignment.index.values))))