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Fix sympy DeprecationWarning #2131

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merged 3 commits into from
Jun 24, 2023
Merged

Fix sympy DeprecationWarning #2131

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3c7a219
Fix sympy DeprecationWarning
dweindl Jun 23, 2023
af956fc
..
dweindl Jun 23, 2023
537281a
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dweindl Jun 23, 2023
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8 changes: 7 additions & 1 deletion python/sdist/amici/sbml_import.py
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Original file line number Diff line number Diff line change
Expand Up @@ -18,6 +18,7 @@
import libsbml as sbml
import numpy as np
import sympy as sp
from sympy.logic.boolalg import BooleanFalse, BooleanTrue

from . import has_clibs
from .constants import SymbolId
Expand Down Expand Up @@ -1047,7 +1048,12 @@ def _process_reactions(self):
reaction.getKineticLaw() or sp.Float(0)
)

self.flux_vector[reaction_index] = sym_math
self.flux_vector[reaction_index] = sym_math.subs(
{
BooleanTrue(): sp.Float(1.0),
BooleanFalse(): sp.Float(0.0),
}
)
if any(
str(symbol) in reaction_ids
for symbol in self.flux_vector[reaction_index].free_symbols
Expand Down