fix issue #298

jade/atlas.py

@@ -26,7 +26,7 @@
 import logging
 
 # import win32com.client
-import aspose.words
+# import aspose.words
 import docx
 import pandas as pd
 from docx.enum.table import WD_ALIGN_VERTICAL

jade/computational.py

@@ -29,7 +29,7 @@
 import jade.testrun as testrun
 
 
-def executeBenchmarksRoutines(session, lib: str, runoption, exp=False) -> None:
+def executeBenchmarksRoutines(session, lib: str, runoption: str, exp=False) -> None:
     """
     Check which benchmarks have to be generated and/or run and execute their
     routines
@@ -42,6 +42,8 @@ def executeBenchmarksRoutines(session, lib: str, runoption, exp=False) -> None:
         library to assess (e.g. 31c)
         or couple activation+transport (e.g. 99c-31c).
         Double quotes are needed.
+    runoption : str
+        if 'c' the code is run in console mode, if 's' is submitted as batch.
     exp : bool
         if True the experimental Benchmarks are selected. The default is False
 

jade/libmanager.py

@@ -123,6 +123,8 @@ def __init__(
         self.isotopes = self.isotope_parser.isotopes
 
         # Convert all columns to lower case
+        # create a copy here or it will modify the configuration file one
+        lib_df = lib_df.copy()
         new_columns = []
         for column in lib_df:
             new_columns.append(column.lower())
@@ -135,6 +137,7 @@ def __init__(
 
         self.data = {}
         self.codes = []
+
         lib_df.set_index("suffix", inplace=True)
         # Initilize the Xsdir object
         # self.XS = xs.Xsdir(xsdir_file)
@@ -173,7 +176,9 @@ def __init__(
                         self.data[code][library] = xsdir
                     else:
                         logging.warning(
-                            "Library %s not present in MCNP XSDIR file: %s", library, path
+                            "Library %s not present in MCNP XSDIR file: %s",
+                            library,
+                            path,
                         )
 
                 elif code == "openmc":
@@ -186,7 +191,9 @@ def __init__(
                         self.data[code][library] = xsdir
                     else:
                         logging.warning(
-                            "Library %s not present in Serpent XSDIR file: %s", library, path
+                            "Library %s not present in Serpent XSDIR file: %s",
+                            library,
+                            path,
                         )
 
                 elif code == "d1s":
@@ -197,7 +204,9 @@ def __init__(
                         self.data[code][library] = xsdir
                     else:
                         logging.warning(
-                            "Library %s not present in D1S XSDIR file: %s", library, path
+                            "Library %s not present in D1S XSDIR file: %s",
+                            library,
+                            path,
                         )
 
                 else: