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Improve SwinUNETR pipeline by adding SwinUNETR-V2 #6183

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heyufan1995 opened this issue Mar 20, 2023 · 0 comments · Fixed by #6203
Closed

Improve SwinUNETR pipeline by adding SwinUNETR-V2 #6183

heyufan1995 opened this issue Mar 20, 2023 · 0 comments · Fixed by #6203
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@tangy5 @heyufan1995
Milestone
Auto3DSeg enhance...

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@heyufan1995
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Add swinunetr-v2 as option for swinunetr initialization.
@heyufan1995 heyufan1995 mentioned this issue Mar 20, 2023
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wyli pushed a commit that referenced this issue Mar 22, 2023
@heyufan1995
Enble swinunetr-v2 (#6203)
4f8bc59 
Fixes #6183 .

### Description
Added a "use_v2" option in swinunetr initialization. Default is false
will not affect the original swinunetr.
Once changed to true, will become swinunetr-v2 with 4 additional
convolution block.
Tested running from auto3dseg bundles, no change needed for original
swinunetr, and works for swinunetr-v2
Tested running from monai research contribution repo for swinuntr, no
change needed for original swinunetr, and works for swinunetr-v2
Tested TensorRT, compiled .ts file successfully.

### Types of changes
<!--- Put an `x` in all the boxes that apply, and remove the not
applicable items -->
- [x] Non-breaking change (fix or new feature that would not break
existing functionality).
- [ ] Breaking change (fix or new feature that would cause existing
functionality to change).
- [ ] New tests added to cover the changes.
- [ ] Integration tests passed locally by running `./runtests.sh -f -u
--net --coverage`.
- [ ] Quick tests passed locally by running `./runtests.sh --quick
--unittests --disttests`.
- [ ] In-line docstrings updated.
- [ ] Documentation updated, tested `make html` command in the `docs/`
folder.

---------

Signed-off-by: heyufan1995 <[email protected]>
jak0bw pushed a commit to jak0bw/MONAI that referenced this issue Mar 28, 2023
@heyufan1995 @jak0bw
Enble swinunetr-v2 (Project-MONAI#6203)
62a73c8 
Fixes Project-MONAI#6183 .

### Description
Added a "use_v2" option in swinunetr initialization. Default is false
will not affect the original swinunetr.
Once changed to true, will become swinunetr-v2 with 4 additional
convolution block.
Tested running from auto3dseg bundles, no change needed for original
swinunetr, and works for swinunetr-v2
Tested running from monai research contribution repo for swinuntr, no
change needed for original swinunetr, and works for swinunetr-v2
Tested TensorRT, compiled .ts file successfully.

### Types of changes
<!--- Put an `x` in all the boxes that apply, and remove the not
applicable items -->
- [x] Non-breaking change (fix or new feature that would not break
existing functionality).
- [ ] Breaking change (fix or new feature that would cause existing
functionality to change).
- [ ] New tests added to cover the changes.
- [ ] Integration tests passed locally by running `./runtests.sh -f -u
--net --coverage`.
- [ ] Quick tests passed locally by running `./runtests.sh --quick
--unittests --disttests`.
- [ ] In-line docstrings updated.
- [ ] Documentation updated, tested `make html` command in the `docs/`
folder.

---------

Signed-off-by: heyufan1995 <[email protected]>
jak0bw pushed a commit to jak0bw/MONAI that referenced this issue Mar 28, 2023
@heyufan1995 @jak0bw
Enble swinunetr-v2 (Project-MONAI#6203)
4802aca 
Fixes Project-MONAI#6183 .

### Description
Added a "use_v2" option in swinunetr initialization. Default is false
will not affect the original swinunetr.
Once changed to true, will become swinunetr-v2 with 4 additional
convolution block.
Tested running from auto3dseg bundles, no change needed for original
swinunetr, and works for swinunetr-v2
Tested running from monai research contribution repo for swinuntr, no
change needed for original swinunetr, and works for swinunetr-v2
Tested TensorRT, compiled .ts file successfully.

### Types of changes
<!--- Put an `x` in all the boxes that apply, and remove the not
applicable items -->
- [x] Non-breaking change (fix or new feature that would not break
existing functionality).
- [ ] Breaking change (fix or new feature that would cause existing
functionality to change).
- [ ] New tests added to cover the changes.
- [ ] Integration tests passed locally by running `./runtests.sh -f -u
--net --coverage`.
- [ ] Quick tests passed locally by running `./runtests.sh --quick
--unittests --disttests`.
- [ ] In-line docstrings updated.
- [ ] Documentation updated, tested `make html` command in the `docs/`
folder.

---------

Signed-off-by: heyufan1995 <[email protected]>
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@heyufan1995 heyufan1995

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MONAI v1.2
Status: Done
Milestone
Auto3DSeg enhancement [P0 v1.2]
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Enable swinunetr-v2 heyufan1995/MONAI
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@tangy5 @heyufan1995