Repositories list

• Bagel

  Public
  Python

  •

  MIT License

  •3•0•0•0•Updated Mar 5, 2025Mar 5, 2025

• Serval

  Public
  Systematic Entity Recognition Validator

  MIT License

  •0•0•0•0•Updated Feb 3, 2025Feb 3, 2025

• nemo-serve

  Public
  Web server for serving trained NER models using Nemo

  Python

  •

  Apache License 2.0

  •0•0•14•3•Updated Sep 25, 2024Sep 25, 2024

• PubtatorToJSON

  Public
  Conversion of data in Pubtator format (e.g., MedMentions data) into JSON format as a benchmarking dataset for validating Bagel NER performance.

  Python

  •

  MIT License

  •0•0•0•0•Updated Aug 31, 2024Aug 31, 2024

• benchmarks

  Public
  Benchmarks and results in comparing between NER engines

  Python

  •

  MIT License

  •0•0•6•1•Updated Aug 30, 2024Aug 30, 2024

• Helm-charts

  Public
  Helm charts repo for NER deployments

  Smarty

  •0•0•0•0•Updated Apr 27, 2024Apr 27, 2024

• sapbert

  Public
  [NAACL & ACL 2021] SapBERT: Self-alignment pretraining for BERT & XL-BEL: Cross-Lingual Biomedical Entity Linking.

  Python

  •

  MIT License

  •35•0•5•0•Updated Apr 26, 2024Apr 26, 2024

• ontorunner

  Public
  Jupyter Notebook

  •

  Creative Commons Zero v1.0 Universal

  •2•0•0•0•Updated Jul 10, 2022Jul 10, 2022

• oger-benchmarks

  Public
  An instance of OGER that we can benchmark

  Python

  •

  MIT License

  •0•0•2•0•Updated Jun 26, 2022Jun 26, 2022

• medtype-benchmarks

  Public
  Benchmarks for the MedType NER tool

  Python

  •0•0•0•1•Updated May 17, 2022May 17, 2022

• nemo-ner

  Public
  Training models for NER with Nemo tookit

  Python

  •0•0•0•0•Updated Apr 29, 2022Apr 29, 2022

• PubMedDS2BIO

  Public
  Converts pubmed ds json format to IOB format

  Python

  •0•0•0•0•Updated Mar 18, 2022Mar 18, 2022