Add typing_extensions requirement to temporarily fix pymatgen iss…

…ue until its next release (see materialsproject/pymatgen-analysis-defects#188)

docs/Dev_ToDo.md

@@ -87,6 +87,7 @@
   there's any useful functionality we want to add!
 
 ## SK To-Do for next update:
+- Remove `typing-extensions` requirement from `pyproject.toml`, once new `pymatgen-analysis-defects` released.
 - `doped` repo/docs cleanup `TODO`s above
 - Quick-start tutorial suggested by Alex G
 - Add chempot grid plotting tool, shown in `JOSS_plots` using Alex's chemical potential grid, and test (and remove TODO from JOSS plots notebook).

docs/Troubleshooting.rst

@@ -14,7 +14,7 @@ message about the origin of the problem, it is likely to be an issue with your v
 
 .. code:: bash
 
-  pip install pymatgen --upgrade
+  pip install pymatgen pymatgen-analysis-defects --upgrade
   pip install doped --upgrade
 
 If this does not solve your issue, please check the specific cases noted below. If your issue still isn't

pyproject.toml

@@ -32,6 +32,9 @@ dependencies = [
     "vise>=0.9.0",  # for eigenvalue analysis, >=0.9.0 required for SOC compatibility
     "easyunfold>=0.3.6",  # for efficient PROCAR parsing (and supporting SOC),
     # if any dependency issues arise can make easyunfold an optional dependency
+    "typing-extensions"  # to fix `pymatgen` typing issues
+    # (https://github.com/materialsproject/pymatgen-analysis-defects/pull/188)
+    # TODO: Remove once new pymatgen-analysis-defects released
 ]
 
 [project.urls]

tests/test_generation.py

@@ -1975,7 +1975,7 @@ def CdTe_defect_gen_check(self, CdTe_defect_gen, generate_supercell=True):
                 atol=1e-3,
             )
 
-    def test_defects_generator_cdte(self):
+    def test_defects_generator_CdTe(self):
         CdTe_defect_gen, output = self._generate_and_test_no_warnings(self.prim_cdte)
 
         assert self.CdTe_defect_gen_info in output  # matches expected 4b & 4d Wyckoff letters for Td
@@ -2902,7 +2902,7 @@ def cd_i_CdTe_supercell_defect_gen_check(self, cd_i_defect_gen):
             atol=1e-3,
         )
 
-    def test_supercell_w_defect_cd_i_cdte(self):
+    def test_supercell_w_defect_cd_i_CdTe(self):
         if not self.heavy_tests:
             return