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Release 1.6.6 #653

Merged
merged 23 commits into from
Dec 2, 2021
Merged

Release 1.6.6 #653

merged 23 commits into from
Dec 2, 2021

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briandrawert
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@briandrawert briandrawert commented Dec 2, 2021 •
edited by seanebum
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GillesPy2 Release v1.6.6

Changes

Fixes

closes #617
closes #646
closes #650

briandrawert and others added 20 commits November 7, 2021 21:00
@briandrawert
Initial commit of the CLE solver
93397f1
@briandrawert
citation
55c1ac1
@briandrawert
Added CLESolver to testing battery
3c82aa0
@briandrawert
fix propensity bug
0b36834
@briandrawert
starting convergence study
13f8f45
@seanebum
changed resume behavior to treat previous end time as time "0" when r…
700c892 
…esuming. Previously, simulation was setting t+increment as time 0, duplicating the state from previous run end time
@seanebum
fix time being cut off by 1
a076f19
@briandrawert
Merge pull request #643 from StochSS/hotfix/pause-resume-2
8162083 
HOTFIX: Pause Resume v2
@briandrawert
Merge branch 'develop' of github.com:StochSS/GillesPy2 into ChemicalL…
17c9a8c 
…angevinEquation_solver
@briandrawert
convergence study
d3ff0e7
@briandrawert
fixed model to do system size scaling correctly, shows convergence now
650be22
@BryanRumsey
Fixed issue with parameters without values.
1d00f74
@seanebum
added reset for trigger condition to "false"
c064686
@BryanRumsey
Fixed the ssa propensity function generated by the mass action reacti…
9bc2329 
…on 2X -> y.
@briandrawert
Merge pull request #648 from StochSS/fix/python-tau-hybrid-events
d527fb6 
Fix - Tau Hybrid Events
@seanebum
Merge pull request #649 from StochSS/hotfix-ssa-propensity
2f88a54 
HOTFIX: SSA Propensity Function
@seanebum
Merge pull request #639 from StochSS/ChemicalLangevinEquation_solver
6958af6 
CLE solver
@briandrawert
Merge pull request #647 from StochSS/hotfix-nan-sbml-param
1b6d9e0 
HOTFIX: SBML Parameters w/o value
@briandrawert
made test to replicate #650
7a76776
@briandrawert
fixed missing import and circular import issue
3b74b9c
@briandrawert briandrawert added this to the 1.6.6 milestone Dec 2, 2021
@briandrawert briandrawert self-assigned this Dec 2, 2021
@BryanRumsey BryanRumsey merged commit ad52917 into main Dec 2, 2021
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@BryanRumsey BryanRumsey BryanRumsey approved these changes

@seanebum seanebum seanebum approved these changes

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@briandrawert briandrawert

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1.6.6
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@briandrawert @seanebum @BryanRumsey