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Release 1.6.6#653

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Merged

BryanRumsey merged 23 commits intomainStochSS/GillesPy2:mainfrom developStochSS/GillesPy2:developCopy head branch name to clipboardDec 2, 2021

+1,380-172

Commits

Commits on Nov 8, 2021

• Initial commit of the CLE solver

  briandrawert

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  93397f1

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• citation

  briandrawert

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  55c1ac1

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• Added CLESolver to testing battery

  briandrawert

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  3c82aa0

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• fix propensity bug

  briandrawert

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Commits on Nov 15, 2021

• starting convergence study

  briandrawert

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Commits on Nov 16, 2021

• changed resume behavior to treat previous end time as time "0" when resuming. Previously, simulation was setting t+increment as time 0, duplicating the state from previous run end time

  seanebum

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Commits on Nov 17, 2021

• fix time being cut off by 1

  seanebum

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  a076f19

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• Merge pull request #643 from StochSS/hotfix/pause-resume-2

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  briandrawert

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  8162083

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• Merge branch 'develop' of github.com:StochSS/GillesPy2 into ChemicalLangevinEquation_solver

  briandrawert

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  17c9a8c

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• convergence study

  briandrawert

  committed
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Commits on Nov 18, 2021

• fixed model to do system size scaling correctly, shows convergence now

  briandrawert

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Commits on Nov 29, 2021

• Fixed issue with parameters without values.

  BryanRumsey

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Commits on Dec 1, 2021

• added reset for trigger condition to "false"

  seanebum

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Commits on Dec 2, 2021

• Fixed the ssa propensity function generated by the mass action reaction 2X -> y.

  BryanRumsey

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  9bc2329

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• Merge pull request #648 from StochSS/fix/python-tau-hybrid-events

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  briandrawert

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• Merge pull request #649 from StochSS/hotfix-ssa-propensity

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  seanebum

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• Merge pull request #639 from StochSS/ChemicalLangevinEquation_solver

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  seanebum

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• Merge pull request #647 from StochSS/hotfix-nan-sbml-param

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  briandrawert

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  1b6d9e0

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• made test to replicate #650

  briandrawert

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  7a76776

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• fixed missing import and circular import issue

  briandrawert

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  3b74b9c

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• updated version to 1.6.6

  briandrawert

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  d00928f

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• Merge pull request #652 from StochSS/fix_650

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  BryanRumsey

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  570e5a1

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• Merge pull request #655 from StochSS/version_166

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  BryanRumsey

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