Release v1.6.8 #676
Merged
Release v1.6.8 #676
Conversation
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
- Fixed return value for `get_event_id()` - Removed duplicate trigger state update - Added validation to `Integrator#integrate` wrapper method
Bug fixes for multi-event models
HOTFIX: SimulationError import
- Changed `--init_pop` to accept `float` rather than `int` to remove rounding on startup - Use `getpid()` as a temporary fix for RNG seed
Pause-resume patch fixes
…ed as Species obj
Improve expression error handling
…priority over the numpy version
- Timeout not working on all solvers - Wrapped each solver in a subtest
- Added `GPY_INTERRUPT_*` macros for cross-platform signal handling - Added macro calls to each solver
- Reduced timeout in unit test to 0.1s - `ODECSolver` completes in <1s - Interrupt checks added to `TauHybridCSolver`
C++ solver `seed` tests, interrupt handler fixes
Fix multi-trajectory bug in `TauHybridCSolver`
Species State Rounding Fix
- Removed all default constructors; should not be able to create a hybrid species/reaction/simulation without a base
- Can be re-enabled with `debug` flag in Python solver object
- Uses "supported" feature list, instead of "unsupported" list - Added check for supported feature validation
- Reaction root-finder should only handle negative-to-positive roots
FIX: C++ Event trigger evaluation
…heck FIX: Hybrid C++ integrator initialization errors
HOTFIX: Cleanup.py
…ulti-event-test
Add unit test for SBML feature validation
added unit test for hybrid solvers based on multifiring event notebook
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
GillesPy2 Release v1.6.8
Changes
cleanup_tempfiles()function for clearing out gillespy2 temp filesget_best_solver()andget_best_algo()methods and will be appropriately selected based on model SBML feature setFixes
TauHybridCSolver#703]seedtests, interrupt handler fixes #701]closes #679
closes #687
closes #688
closes #698
closes #702
closes #704
closes #705
closes #712
closes #715
closes #716
closes #720
closes #721