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Fixes the issue where numerical errors are introduced with continuous values when being evaluated for stochastic reactions. It's fixed by making the simulation's
current_state
array be exclusivelydouble
, instead of using adouble
array for deterministic reactions and a separateint
array for stochastic ones.Changes
current_populations
vector in C++ solver are removedcurrent_populations
(int
vector) now usecurrent_state
instead (double
vector)map_ode_propensity
andmap_ssa_propensity
are added to the template file, which allows the hybrid solver to explicitly specify which propensity to usemap_propensity
, where the decision was made based on the type (double
orint
) of the state vectorHybridReaction
class, to reduce code duplicationdouble
as state vectorFixes