BHBC-1736: Fix Read More/Read Less idempotence bug #772
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@@ Coverage Diff @@
## dev #772 +/- ##
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Coverage 71.96% 71.97%
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Files 364 364
Lines 12706 12708 +2
Branches 2356 2357 +1
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+ Hits 9144 9146 +2
Misses 3037 3037
Partials 525 525
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anissa-agahchen
previously approved these changes
May 9, 2022
NickPhura
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May 9, 2022
NickPhura
approved these changes
May 9, 2022
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NickPhura
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May 10, 2022
* Fix/Enhancement: Port improved user access request functionality from Restoration, Adjust access request approval to account for existing bceid-basic-business identity sources (#771) - Port improved user access request functionality from Restoration - Better/fixed handling for approving/denying user requests - Adjust access request approval to account for existing bceid-basic-business identity sources - Existing access requests created before we accounted for bceid-basic-and-business identity sources should no longer throw an error when trying to approve/deny them. * BHBC-1730: Use centerOfMass instead of centroid for project area center (#770) * BHBC-1730: Use centerOfMass instead of centroid for project area center point. * BHBC-1736: Fix Read More/Read Less idempotence bug (#772) * BHBC-1736: Tighten qualification for string truncating * BHBC-1736: Fix null coalesce * BHBC-1736: Change variable name to be more descriptive Co-authored-by: Curtis Upshall <[email protected]>
NickPhura
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* Update README.md * First commit (#566) * First commit * Upload * Update the sec produre for unseceruing an attachment * Version update * Update for single upload button * New fixtures * Update * Survey script * delete survey * Spacing * Moving to test (#611) * Update README.md * First commit (#566) * First commit * Upload * Update the sec produre for unseceruing an attachment * Version update * Update for single upload button * New fixtures * Update * Survey script * delete survey * Spacing * Update access request page: remove regional offices section, remove non-supported roles from dropdown (#610) * [BHBC-1449] Add Help Link (#614) * Update template validation schemas (#612) * Add migration to update moose SRB/Composition Validation schema * Add Summary Statistics file to resources page * Add Date column to recruitment survey * Fix dependency warnings * Remove unused test function * Update deployStatic.yml * Move into test (#615) * Update README.md * First commit (#566) * First commit * Upload * Update the sec produre for unseceruing an attachment * Version update * Update for single upload button * New fixtures * Update * Survey script * delete survey * Spacing * Update access request page: remove regional offices section, remove non-supported roles from dropdown (#610) * [BHBC-1449] Add Help Link (#614) * Update template validation schemas (#612) * Add migration to update moose SRB/Composition Validation schema * Add Summary Statistics file to resources page * Add Date column to recruitment survey * Fix dependency warnings * Remove unused test function * Update deployStatic.yml Co-authored-by: Nick Phura <[email protected]> Co-authored-by: jeznorth <[email protected]> * BHBC-1363 (#599) Support project/survey report attachments with meta * Add admin only endpoint to update the api log level at runtime (#619) * Add admin only endpoint to update the api log level at runtime * Update test * Adding Test scripts (#617) * Adding Test scripts * Create project and Survey * Remove second test file * Test Updates/Fixes (#620) Test updates/Fixes * BHBC-1363-2: Fix signed url for reports, update fileupload to support single file only settings. (#621) * BHBC-1461 (#622) * Readme makefile updates (#623) * Update Makefile, Readme, env * Rename BioHub -> SIMS * Add `Order By` clause to species sql (#627) * BHBC-1462: Add new record to proprietary_type lookup table. (#629) - Update code to leverage the `is_first_nation` column from the proprietary_type table. - Previously the code was using the row id * BHBC-1470: View/edit survey and project metadata (#624) BHBC-1470: View/edit survey and project metadata (#624) * BHBC-1478: Update API to check project level permissions. (#630) * Combine dependabot (#634) * Bump tmpl from 1.0.4 to 1.0.5 in /app Bumps [tmpl](https://github.com/daaku/nodejs-tmpl) from 1.0.4 to 1.0.5. - [Release notes](https://github.com/daaku/nodejs-tmpl/releases) - [Commits](https://github.com/daaku/nodejs-tmpl/commits/v1.0.5) --- updated-dependencies: - dependency-name: tmpl dependency-type: indirect ... Signed-off-by: dependabot[bot] <[email protected]> * Bump ws from 5.2.2 to 5.2.3 in /app Bumps [ws](https://github.com/websockets/ws) from 5.2.2 to 5.2.3. - [Release notes](https://github.com/websockets/ws/releases) - [Commits](websockets/ws@5.2.2...5.2.3) --- updated-dependencies: - dependency-name: ws dependency-type: indirect ... Signed-off-by: dependabot[bot] <[email protected]> * Bump validator from 13.6.0 to 13.7.0 in /n8n Bumps [validator](https://github.com/validatorjs/validator.js) from 13.6.0 to 13.7.0. - [Release notes](https://github.com/validatorjs/validator.js/releases) - [Changelog](https://github.com/validatorjs/validator.js/blob/master/CHANGELOG.md) - [Commits](validatorjs/validator.js@13.6.0...13.7.0) --- updated-dependencies: - dependency-name: validator dependency-type: indirect ... Signed-off-by: dependabot[bot] <[email protected]> * Update Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * migration (#637) * Bhbc 1470 (#638) * Small test script and seeding changes (#631) * Small test script and seeding changes * Remove Shreyas from the seed Co-authored-by: Nick Phura <[email protected]> * Create zap.yml * Update zap.yml * Create dev.context * Update zap.yml * Zap follow up (#640) * Small test script and seeding changes * Remove Shreyas from the seed * Details for ZAP * Subtitute hardcoded PW with GHA- Secret * [BHBC-1470] Increase Report Summary Input Size (#641) * Update zap.yml * Update zap.yml * Update zap.yml * Update zap.yml * Update zap.yml * Update zap.yml * Update zap.yml * Update zap.yml * Update zap.yml * Update zap.yml * Update zap.yml * BHBC-1467: One page project/survey layout (#636) One page project/survey layout * Test Script update, login and some other details (#646) * Test Script update, login and some other details * Add delay to login * Remove file * Pointing to the right authurl * Path confusion * And again * It is all in the timing * Update readme as per Nick's comment * BHBC-950 (#643) - System admin users can delete other system users. * Update DialogContext.Snackbar(#647) Update snackbar to accept ReactNode as message * Update deployStatic.yml * [BHBC-950] UI Cleanup (#648) * [BHBC-950] UI Cleanup * [BHBC-950] Updating UI * Trigger Build * Update to test script to deal with changed id for report upload * [BHBC-950] Fixing Request Access Table Co-authored-by: Roland Stens <[email protected]> Co-authored-by: Anissa Agahchen <[email protected]> * Update deployStatic.yml * BHBC-949: Manage Project Team - Add + Delete User (#645) - Add project users page - Add project users "add project participant" form - Add delete project user functionality - Update some api project role authorization checks - Update some frontend role check functionality - misc fixes/updates * Update deployStatic.yml * First test (#650) * First test * Update path * - update older node versions to 14 - Increase tsconfig versions - Increase a few package.json versions - Update a few git actions to latest versions * Revert accidental backup file change * Set back to es2015 otherwise the test framework will fail Co-authored-by: Nick Phura <[email protected]> * Update deployStatic.yml * Manage system/project roles (#649) * BHBC-948: Allow users to change existing system user roles. * BHBC-1491: Allow users to change existing project participant's roles. * Update deployStatic.yml * [BHBC-948] UI Updates / Cleanup (#652) * Updates to Agancies and Proeject Coordinator name/label * Revert "Merge branch 'dev' of https://github.com/bcgov/biohubbc into dev" This reverts commit 16b5f48, reversing changes made to 1c88d34. * Changes to codes.ts for removing BC and all over for the coordinator vs contact name … (#654) * Cahnges to codes.ts and all over for the coordinator ro contact name change * Update snapshots * Finish BHBC-1505 * Update deployStatic.yml * BHBC-1457 (#651) Implemented EML endpoint and addition to target DwC archive file on S3. Moved all EML creation functionality to middle tier tooling. * Tech debt (#653) * Split up the workflow for uploading project/survey attachments and project/survey reports * associated tests * Updates to the test script and table changes (#658) * All changes * Update to formatting * Remove new table * Bhbc 1499 (#656) Updates to the Moose template and transformation configs * BHBC-1527: system and project roles updated (#659) * update url for download (#660) * Fix wonky survey view/view-for-update queries + misc (#664) * Fix survey view/view-for-update queries + misc * BHBC-1496: Transform Lat/Long to Darwin Core Accepted Format (#667) - Enhance transformations to allow multiple source columns in parse step (uses first non-null value) - Update scrape SQL to account for UTM or LatLong verbatimCoordinates - Add `parseLatLongString` spatial-util function to parse a lat long string. * BHBC-1525 (#669) * BHBC-1525 - initial EML test file and low hanging target testing * remove unused system accounts (#666) * remove unused system accounts * update code to reference previously updated role names * Security rules for PorH (#668) * Security rules for PorH * Endpoint Tests (#661) * Add missing `connection.commit`'s (#671) * Update endpoint role authorization (#670) * Update endpoint role authorization * Update occurrence scrape verbatimCoordinates handling * Bhbc 1400 (#657) Goat template validations and transformations Sheep template validations and transformations * UI Updates / Clean-up (#674) * Update all the BC and DC to tune the resource usage (#678) * BHBC-1523: Add new users (#675) * Added "+ new users" button on Admin user page and added testing for both API and app. * Bhbc 1529- Add custom props to templates (#677) * BHBC-1530: Update Moose transformations to account for all fields. (#680) * BHBC-1530 - Enhance xlsx transformation parse step - Update Moose validation/transformation schemas - Minor refactor to part of transformation code - Update resource page link * BHBC-1520: View user details (#679) - Ability to add system users from the manage users page - Associated endpoints and tests - Page to view user details and their associated projects - Ability to remove user from projects or update their role. - Associated endpoints and tests - Reduce some api code duplication * BHBC-1531 (#683) * BHBC-1531 - adjusted taxonomic codes to exclude those codes that have end date setc * Fix focal species yup schema validation rule * BHBC-1520 (#684) Prevent projects from having no Project Lead role: bug fixes + tests * BHBC-1512: Added zoom for fullscreen map on project details. (#685) Added zoom for fullscreen map on project details * Enhance useInterval hook to support a timeout. Add unit tests. (#686) * BHBC-1512-2: Additional map scroll wheel zoom changes (#687) * BHBC-1512-2: Additional map scroll wheel zoom changes * BHBC-1545: Tech Debt: Re-export all queries via queries.ts. Update custom error naming. (#688) Add index files for all query folders Add queries.ts to re-export all queries. Update all references to existing queries to instead reference queries.ts Rename `CustomError.ts->CustomError` to `custom-error.ts->HTTPError` and all references. Run formatter/linter. * BHBC-1545: Tech Debt: Updated apidoc for /user/* (#681) Update openapi doc for /user/* endpoints Misc unit test updates * BHBC-1503: GCNotfiy (#689) * Created GCNotify Api endpoint for generic email functionality * BHBC-1557: Tech Debt 3 (#690) * Add user-service.ts Move user functions to user-service.ts. Update tests. Add code-service.ts Move code functions to code-service.ts Update tests. Misc root-api-doc.ts cleanup Add swagger-ui container to docker-compose * Add SwaggerUI to docker-compose.yml (for local dev currently) * Minor makefile updates * Updates to error classes * Updates to error logging * Minor test tweak * Handle DatabaseErrors * remove console logs * BHBC-1492: Email Access Request (#692) * BHBC-1557: Tech Debt - Update App route handling and route security. (#693) * Tech debt: Fix partnerships, and update /project/{projectId}/update endpoint (#694) * BHBC-1557: Ke-tech-debt (#698) * updated openApi schemas * Added Survey creation. (#700) * Unify dependabot (#701) * Bump nanoid from 3.1.30 to 3.2.0 in /n8n (#704) * Bump copy-props from 2.0.4 to 2.0.5 in /api (#702) * Bump node-fetch from 2.6.5 to 2.6.7 in /n8n (#705) * BHBC-1557: Add ProjectService. (#699) * Bump lodash from 4.17.20 to 4.17.21 in /app (#703) Bumps [lodash](https://github.com/lodash/lodash) from 4.17.20 to 4.17.21. - [Release notes](https://github.com/lodash/lodash/releases) - [Commits](lodash/lodash@4.17.20...4.17.21) --- updated-dependencies: - dependency-name: lodash dependency-type: indirect ... Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Anissa Agahchen <[email protected]> * BHBC-1493: Approval Email For Access Request (#708) Approval email sent to idir email connected to access request user. * Dev ops scale schemaspy up and down (#709) * Scale SchemaSpy as part of the pipeline to make sure it is current all the time * Make it a one step SchemaSpy cycle * Formatting * Fix typo * Reduce cpu/request limits * Revert "Reduce cpu/request limits" This reverts commit b99f8cb. * Reduce cpu/request limits + Adjust default Log Level (#716) * BCEID bug fix + improvements (#717) * BHBC-1613 - support bceid login (#720) * BHBC-1580: Updates to moose/sheep/goat templates (#725) * Tech debt 6 (#707) * Disable html logging when running app tests. * Update logger utils, make mocha disable winston logger before test execution * Add missing type definition for @tmcw/togeojson * Updates to map components (from resto) * Update typescript and knex versions, remove swagger ui docker compose step, add swagger-ui directly to app * Incorporate dependabot changes * Update eslint config * Run lint-fix using updated eslint rules and fix issues * Update startend date component * Move old `/users` endpoint to `/user/list` * First cut of the postman collection with automatic login (#726) * Isolating Service Code (#724) Port changes from restoration to move functionality to services * Update siteminder url (#736) * Survey- Additional Fields (#731) * create/view/edit survey page with new purpose and methodology form * addition of "ecological season", "intended outcome" and "vantage" lookup tables & removal of common survey methodology - field table name change to "field method" * "survey.objectives" attribute name change to "survey.additional_details" * seeding new lookup tables * re-seed "field method" table * tests * package lock updates for minimist (#740) * dependabot change version for moment (#739) * Bump convict from 6.2.0 to 6.2.2 in /n8n (#745) Bumps [convict](https://github.com/mozilla/node-convict) from 6.2.0 to 6.2.2. - [Release notes](https://github.com/mozilla/node-convict/releases) - [Changelog](https://github.com/mozilla/node-convict/blob/master/CHANGELOG.md) - [Commits](mozilla/node-convict@v6.2.0...v6.2.2) --- updated-dependencies: - dependency-name: convict dependency-type: indirect ... Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * Bump async from 2.6.3 to 2.6.4 in /app (#743) Bumps [async](https://github.com/caolan/async) from 2.6.3 to 2.6.4. - [Release notes](https://github.com/caolan/async/releases) - [Changelog](https://github.com/caolan/async/blob/v2.6.4/CHANGELOG.md) - [Commits](caolan/async@v2.6.3...v2.6.4) --- updated-dependencies: - dependency-name: async dependency-type: indirect ... Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * Bump async from 3.2.0 to 3.2.3 in /testing/e2e (#742) Bumps [async](https://github.com/caolan/async) from 3.2.0 to 3.2.3. - [Release notes](https://github.com/caolan/async/releases) - [Changelog](https://github.com/caolan/async/blob/master/CHANGELOG.md) - [Commits](caolan/async@v3.2.0...v3.2.3) --- updated-dependencies: - dependency-name: async dependency-type: indirect ... Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * BHBC-1688: Add survey radio field (#746) * BHBC-1688: Add new radio button field to survey. * Add github action to write openshift urls * Techdebt (#741) remove default logs fix tests fix code smells * Misc Cleanup (#748) * misc cleanup * Update user seed file * BHBC-1690: Add scroll to error formik component (#749) * Scroll to survey form errors. * Fix vantage codes bug that returned an array with a null element (#750) * Sims taxonomy (#744) * app is working with the taxonomy service * updated snapshots * tests * survey service set up, using it for survey list * skipping broken tests * Remove `wldtaxonomic_units` table from survey queries * merge conflicts fixed * skipped some tests * add TODO comment * Trigger Build * Fix some tests * fixes attachmentList * fixed tests * Update project page test * surveysList test updated * Update ProjectsListPage.test.tsx * Update ReviewAccessRequestForm.test.tsx * test for Active Users List * fix more tests * code smells * Remove unused imports * fix general information bug * fix warning on general information form Co-authored-by: Nick Phura <[email protected]> Co-authored-by: Kjartan <[email protected]> * BHBC-1689: Implement API Response Validation (#737) * Add api response validation * Updates * update reponse for the project attachments list * BHBC-1689: Add validation to projects * BHBC-1689: Add response validation to surveys + attachments + observations * BHBC-1689: Add response validation to project attachments. * BHBC-1689: Fix publish_year type for report attachment uploading via POST. * BHBC-1689: Fix api response validation for user data response. * BHBC-1689: Change year_published type from string to number in attachment tests. * BHBC-1689: Update tests * Update occurrence submission response openapi * BHBC-1689: Fix api response validation for uploads * Update summary submission openapi and parse logic * BHBC-1689: Fix all failing tests for reports * BHBC-1689: Make lint-fix and make format-fix. * BHBC-1689: Remove console logs used for testing. * api validation for view.ts and surveys.ts * BHBC-1689: Fix validation for surveys. * BHBC-1689: Fix additional survey validation errors re publish_date. * BHBC-1689: Fix additional survey validation for purpose_and_methodolgy and proprietary_data. Co-authored-by: Anissa Agahchen <[email protected]> Co-authored-by: Curtis Upshall <[email protected]> * Add prettier organize imports plugin (#747) * Add prettier organize imports plugin * Run formatter * move permit endpoint functions to service (#751) * move permit endpoint functions to service * trigger openshift deploy * fix code smell * code smell v2 * Adjust elastic search query config to handle query terms with spaces (#752) * Adjust elastic search query config to handle query terms with spaces * Remove whole word search as it doesnt work, using this style anyways. * BHBC-1720: Added required fields indicators (#756) * BHBC-1720: Added asterisk to Project Boundary heading. * BHBC-1720: Add required indicator for surveyed_all_areas (not finalized). * BHBC-1720: Changed to 'Surveyed Areas *' * BHBC-1720: Update snapshot tests * Hide MU regions from the display list (#754) * removed MU regions list from the display * update api_delete_survey sql function (#757) * date picker fix (#753) * Bhbc-1725 fix deleting funding agency error (#758) * fix funding_source delete error * Bhbc 1728 (#760) Misc UI Clean-up Fixed the report year issue Fixing version to string * BHBC-1731: Fix open api spec (#762) Fix open api specs for survey-view, survey funding sources update, and project-view * Fix permit dropdown (#759) * remove the ability to select a non-sampling permit (when editing a project) * tweak openapi spec for public project view * More openapi fixes (#764) * public attachments received attachment/reports && secured/unsecured correctly * fixed api calls for retrieve signedUrl and to get unsecured files * Email to outlook (#765) * fixed email redirect in header * make agency_project_id nullable * remove permit from the public page * BHBC-1724: Fix edit dialog control clipping. (#761) Fix edit dialog control clipping * BHBC-1727: Add 'Zoom to Boundary Extent' button to SurveyStudyArea. (#763) * BHBC-1727: Add 'Zoom to Boundary Extent' button to SurveyStudyArea. * BHBC-1727: Automatically zoom to boundary extent upon rendering survey details. * BHBC-1727: make lint-fix; make format-fix; * BHBC-1727: Make Zoom to Boundary Extent button appear on top of the map * BHBC-1727: Fix codesmell. * BHBC-1727: Use absolute 'Zoom to boundary extent' IconButton in survey area map editor dialog. * BHBC-1727: Add 'Zoom to boundary extent' IconButton to Project Location map. * BHBC-1727: lint-fix and format-fit * BHBC-1727: Made PR requested changes. * BHBC-1727: Make lint-fix. * BHBC-1727: Update snapshot tests Co-authored-by: Anissa Agahchen <[email protected]> * Fix user seed role id * Move to test (#767) * Update README.md * First commit (#566) * First commit * Upload * Update the sec produre for unseceruing an attachment * Version update * Update for single upload button * New fixtures * Update * Survey script * delete survey * Spacing * Update access request page: remove regional offices section, remove non-supported roles from dropdown (#610) * [BHBC-1449] Add Help Link (#614) * Update template validation schemas (#612) * Add migration to update moose SRB/Composition Validation schema * Add Summary Statistics file to resources page * Add Date column to recruitment survey * Fix dependency warnings * Remove unused test function * Update deployStatic.yml * BHBC-1363 (#599) Support project/survey report attachments with meta * Add admin only endpoint to update the api log level at runtime (#619) * Add admin only endpoint to update the api log level at runtime * Update test * Adding Test scripts (#617) * Adding Test scripts * Create project and Survey * Remove second test file * Test Updates/Fixes (#620) Test updates/Fixes * BHBC-1363-2: Fix signed url for reports, update fileupload to support single file only settings. (#621) * BHBC-1461 (#622) * Readme makefile updates (#623) * Update Makefile, Readme, env * Rename BioHub -> SIMS * Add `Order By` clause to species sql (#627) * BHBC-1462: Add new record to proprietary_type lookup table. (#629) - Update code to leverage the `is_first_nation` column from the proprietary_type table. - Previously the code was using the row id * BHBC-1470: View/edit survey and project metadata (#624) BHBC-1470: View/edit survey and project metadata (#624) * BHBC-1478: Update API to check project level permissions. (#630) * Combine dependabot (#634) * Bump tmpl from 1.0.4 to 1.0.5 in /app Bumps [tmpl](https://github.com/daaku/nodejs-tmpl) from 1.0.4 to 1.0.5. - [Release notes](https://github.com/daaku/nodejs-tmpl/releases) - [Commits](https://github.com/daaku/nodejs-tmpl/commits/v1.0.5) --- updated-dependencies: - dependency-name: tmpl dependency-type: indirect ... Signed-off-by: dependabot[bot] <[email protected]> * Bump ws from 5.2.2 to 5.2.3 in /app Bumps [ws](https://github.com/websockets/ws) from 5.2.2 to 5.2.3. - [Release notes](https://github.com/websockets/ws/releases) - [Commits](websockets/ws@5.2.2...5.2.3) --- updated-dependencies: - dependency-name: ws dependency-type: indirect ... Signed-off-by: dependabot[bot] <[email protected]> * Bump validator from 13.6.0 to 13.7.0 in /n8n Bumps [validator](https://github.com/validatorjs/validator.js) from 13.6.0 to 13.7.0. - [Release notes](https://github.com/validatorjs/validator.js/releases) - [Changelog](https://github.com/validatorjs/validator.js/blob/master/CHANGELOG.md) - [Commits](validatorjs/validator.js@13.6.0...13.7.0) --- updated-dependencies: - dependency-name: validator dependency-type: indirect ... Signed-off-by: dependabot[bot] <[email protected]> * Update Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * migration (#637) * Bhbc 1470 (#638) * Small test script and seeding changes (#631) * Small test script and seeding changes * Remove Shreyas from the seed Co-authored-by: Nick Phura <[email protected]> * Create zap.yml * Update zap.yml * Create dev.context * Update zap.yml * Zap follow up (#640) * Small test script and seeding changes * Remove Shreyas from the seed * Details for ZAP * Subtitute hardcoded PW with GHA- Secret * [BHBC-1470] Increase Report Summary Input Size (#641) * Update zap.yml * Update zap.yml * Update zap.yml * Update zap.yml * Update zap.yml * Update zap.yml * Update zap.yml * Update zap.yml * Update zap.yml * Update zap.yml * Update zap.yml * BHBC-1467: One page project/survey layout (#636) One page project/survey layout * Test Script update, login and some other details (#646) * Test Script update, login and some other details * Add delay to login * Remove file * Pointing to the right authurl * Path confusion * And again * It is all in the timing * Update readme as per Nick's comment * BHBC-950 (#643) - System admin users can delete other system users. * Update DialogContext.Snackbar(#647) Update snackbar to accept ReactNode as message * Update deployStatic.yml * [BHBC-950] UI Cleanup (#648) * [BHBC-950] UI Cleanup * [BHBC-950] Updating UI * Trigger Build * Update to test script to deal with changed id for report upload * [BHBC-950] Fixing Request Access Table Co-authored-by: Roland Stens <[email protected]> Co-authored-by: Anissa Agahchen <[email protected]> * Update deployStatic.yml * BHBC-949: Manage Project Team - Add + Delete User (#645) - Add project users page - Add project users "add project participant" form - Add delete project user functionality - Update some api project role authorization checks - Update some frontend role check functionality - misc fixes/updates * Update deployStatic.yml * First test (#650) * First test * Update path * - update older node versions to 14 - Increase tsconfig versions - Increase a few package.json versions - Update a few git actions to latest versions * Revert accidental backup file change * Set back to es2015 otherwise the test framework will fail Co-authored-by: Nick Phura <[email protected]> * Update deployStatic.yml * Manage system/project roles (#649) * BHBC-948: Allow users to change existing system user roles. * BHBC-1491: Allow users to change existing project participant's roles. * Update deployStatic.yml * [BHBC-948] UI Updates / Cleanup (#652) * Updates to Agancies and Proeject Coordinator name/label * Revert "Merge branch 'dev' of https://github.com/bcgov/biohubbc into dev" This reverts commit 16b5f48, reversing changes made to 1c88d34. * Changes to codes.ts for removing BC and all over for the coordinator vs contact name … (#654) * Cahnges to codes.ts and all over for the coordinator ro contact name change * Update snapshots * Finish BHBC-1505 * Update deployStatic.yml * BHBC-1457 (#651) Implemented EML endpoint and addition to target DwC archive file on S3. Moved all EML creation functionality to middle tier tooling. * Tech debt (#653) * Split up the workflow for uploading project/survey attachments and project/survey reports * associated tests * Updates to the test script and table changes (#658) * All changes * Update to formatting * Remove new table * Bhbc 1499 (#656) Updates to the Moose template and transformation configs * BHBC-1527: system and project roles updated (#659) * update url for download (#660) * Fix wonky survey view/view-for-update queries + misc (#664) * Fix survey view/view-for-update queries + misc * BHBC-1496: Transform Lat/Long to Darwin Core Accepted Format (#667) - Enhance transformations to allow multiple source columns in parse step (uses first non-null value) - Update scrape SQL to account for UTM or LatLong verbatimCoordinates - Add `parseLatLongString` spatial-util function to parse a lat long string. * BHBC-1525 (#669) * BHBC-1525 - initial EML test file and low hanging target testing * remove unused system accounts (#666) * remove unused system accounts * update code to reference previously updated role names * Security rules for PorH (#668) * Security rules for PorH * Endpoint Tests (#661) * Add missing `connection.commit`'s (#671) * Update endpoint role authorization (#670) * Update endpoint role authorization * Update occurrence scrape verbatimCoordinates handling * Bhbc 1400 (#657) Goat template validations and transformations Sheep template validations and transformations * UI Updates / Clean-up (#674) * Update all the BC and DC to tune the resource usage (#678) * BHBC-1523: Add new users (#675) * Added "+ new users" button on Admin user page and added testing for both API and app. * Bhbc 1529- Add custom props to templates (#677) * BHBC-1530: Update Moose transformations to account for all fields. (#680) * BHBC-1530 - Enhance xlsx transformation parse step - Update Moose validation/transformation schemas - Minor refactor to part of transformation code - Update resource page link * BHBC-1520: View user details (#679) - Ability to add system users from the manage users page - Associated endpoints and tests - Page to view user details and their associated projects - Ability to remove user from projects or update their role. - Associated endpoints and tests - Reduce some api code duplication * BHBC-1531 (#683) * BHBC-1531 - adjusted taxonomic codes to exclude those codes that have end date setc * Fix focal species yup schema validation rule * BHBC-1520 (#684) Prevent projects from having no Project Lead role: bug fixes + tests * BHBC-1512: Added zoom for fullscreen map on project details. (#685) Added zoom for fullscreen map on project details * Enhance useInterval hook to support a timeout. Add unit tests. (#686) * BHBC-1512-2: Additional map scroll wheel zoom changes (#687) * BHBC-1512-2: Additional map scroll wheel zoom changes * BHBC-1545: Tech Debt: Re-export all queries via queries.ts. Update custom error naming. (#688) Add index files for all query folders Add queries.ts to re-export all queries. Update all references to existing queries to instead reference queries.ts Rename `CustomError.ts->CustomError` to `custom-error.ts->HTTPError` and all references. Run formatter/linter. * BHBC-1545: Tech Debt: Updated apidoc for /user/* (#681) Update openapi doc for /user/* endpoints Misc unit test updates * BHBC-1503: GCNotfiy (#689) * Created GCNotify Api endpoint for generic email functionality * BHBC-1557: Tech Debt 3 (#690) * Add user-service.ts Move user functions to user-service.ts. Update tests. Add code-service.ts Move code functions to code-service.ts Update tests. Misc root-api-doc.ts cleanup Add swagger-ui container to docker-compose * Add SwaggerUI to docker-compose.yml (for local dev currently) * Minor makefile updates * Updates to error classes * Updates to error logging * Minor test tweak * Handle DatabaseErrors * remove console logs * BHBC-1492: Email Access Request (#692) * BHBC-1557: Tech Debt - Update App route handling and route security. (#693) * Tech debt: Fix partnerships, and update /project/{projectId}/update endpoint (#694) * BHBC-1557: Ke-tech-debt (#698) * updated openApi schemas * Added Survey creation. (#700) * Unify dependabot (#701) * Bump nanoid from 3.1.30 to 3.2.0 in /n8n (#704) * Bump copy-props from 2.0.4 to 2.0.5 in /api (#702) * Bump node-fetch from 2.6.5 to 2.6.7 in /n8n (#705) * BHBC-1557: Add ProjectService. (#699) * Bump lodash from 4.17.20 to 4.17.21 in /app (#703) Bumps [lodash](https://github.com/lodash/lodash) from 4.17.20 to 4.17.21. - [Release notes](https://github.com/lodash/lodash/releases) - [Commits](lodash/lodash@4.17.20...4.17.21) --- updated-dependencies: - dependency-name: lodash dependency-type: indirect ... Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Anissa Agahchen <[email protected]> * BHBC-1493: Approval Email For Access Request (#708) Approval email sent to idir email connected to access request user. * Dev ops scale schemaspy up and down (#709) * Scale SchemaSpy as part of the pipeline to make sure it is current all the time * Make it a one step SchemaSpy cycle * Formatting * Fix typo * Reduce cpu/request limits * Revert "Reduce cpu/request limits" This reverts commit b99f8cb. * Reduce cpu/request limits + Adjust default Log Level (#716) * BCEID bug fix + improvements (#717) * BHBC-1613 - support bceid login (#720) * BHBC-1580: Updates to moose/sheep/goat templates (#725) * Tech debt 6 (#707) * Disable html logging when running app tests. * Update logger utils, make mocha disable winston logger before test execution * Add missing type definition for @tmcw/togeojson * Updates to map components (from resto) * Update typescript and knex versions, remove swagger ui docker compose step, add swagger-ui directly to app * Incorporate dependabot changes * Update eslint config * Run lint-fix using updated eslint rules and fix issues * Update startend date component * Move old `/users` endpoint to `/user/list` * First cut of the postman collection with automatic login (#726) * Isolating Service Code (#724) Port changes from restoration to move functionality to services * Update siteminder url (#736) * Survey- Additional Fields (#731) * create/view/edit survey page with new purpose and methodology form * addition of "ecological season", "intended outcome" and "vantage" lookup tables & removal of common survey methodology - field table name change to "field method" * "survey.objectives" attribute name change to "survey.additional_details" * seeding new lookup tables * re-seed "field method" table * tests * package lock updates for minimist (#740) * dependabot change version for moment (#739) * Bump convict from 6.2.0 to 6.2.2 in /n8n (#745) Bumps [convict](https://github.com/mozilla/node-convict) from 6.2.0 to 6.2.2. - [Release notes](https://github.com/mozilla/node-convict/releases) - [Changelog](https://github.com/mozilla/node-convict/blob/master/CHANGELOG.md) - [Commits](mozilla/node-convict@v6.2.0...v6.2.2) --- updated-dependencies: - dependency-name: convict dependency-type: indirect ... Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * Bump async from 2.6.3 to 2.6.4 in /app (#743) Bumps [async](https://github.com/caolan/async) from 2.6.3 to 2.6.4. - [Release notes](https://github.com/caolan/async/releases) - [Changelog](https://github.com/caolan/async/blob/v2.6.4/CHANGELOG.md) - [Commits](caolan/async@v2.6.3...v2.6.4) --- updated-dependencies: - dependency-name: async dependency-type: indirect ... Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * Bump async from 3.2.0 to 3.2.3 in /testing/e2e (#742) Bumps [async](https://github.com/caolan/async) from 3.2.0 to 3.2.3. - [Release notes](https://github.com/caolan/async/releases) - [Changelog](https://github.com/caolan/async/blob/master/CHANGELOG.md) - [Commits](caolan/async@v3.2.0...v3.2.3) --- updated-dependencies: - dependency-name: async dependency-type: indirect ... Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * BHBC-1688: Add survey radio field (#746) * BHBC-1688: Add new radio button field to survey. * Add github action to write openshift urls * Techdebt (#741) remove default logs fix tests fix code smells * Misc Cleanup (#748) * misc cleanup * Update user seed file * BHBC-1690: Add scroll to error formik component (#749) * Scroll to survey form errors. * Fix vantage codes bug that returned an array with a null element (#750) * Sims taxonomy (#744) * app is working with the taxonomy service * updated snapshots * tests * survey service set up, using it for survey list * skipping broken tests * Remove `wldtaxonomic_units` table from survey queries * merge conflicts fixed * skipped some tests * add TODO comment * Trigger Build * Fix some tests * fixes attachmentList * fixed tests * Update project page test * surveysList test updated * Update ProjectsListPage.test.tsx * Update ReviewAccessRequestForm.test.tsx * test for Active Users List * fix more tests * code smells * Remove unused imports * fix general information bug * fix warning on general information form Co-authored-by: Nick Phura <[email protected]> Co-authored-by: Kjartan <[email protected]> * BHBC-1689: Implement API Response Validation (#737) * Add api response validation * Updates * update reponse for the project attachments list * BHBC-1689: Add validation to projects * BHBC-1689: Add response validation to surveys + attachments + observations * BHBC-1689: Add response validation to project attachments. * BHBC-1689: Fix publish_year type for report attachment uploading via POST. * BHBC-1689: Fix api response validation for user data response. * BHBC-1689: Change year_published type from string to number in attachment tests. * BHBC-1689: Update tests * Update occurrence submission response openapi * BHBC-1689: Fix api response validation for uploads * Update summary submission openapi and parse logic * BHBC-1689: Fix all failing tests for reports * BHBC-1689: Make lint-fix and make format-fix. * BHBC-1689: Remove console logs used for testing. * api validation for view.ts and surveys.ts * BHBC-1689: Fix validation for surveys. * BHBC-1689: Fix additional survey validation errors re publish_date. * BHBC-1689: Fix additional survey validation for purpose_and_methodolgy and proprietary_data. Co-authored-by: Anissa Agahchen <[email protected]> Co-authored-by: Curtis Upshall <[email protected]> * Add prettier organize imports plugin (#747) * Add prettier organize imports plugin * Run formatter * move permit endpoint functions to service (#751) * move permit endpoint functions to service * trigger openshift deploy * fix code smell * code smell v2 * Adjust elastic search query config to handle query terms with spaces (#752) * Adjust elastic search query config to handle query terms with spaces * Remove whole word search as it doesnt work, using this style anyways. * BHBC-1720: Added required fields indicators (#756) * BHBC-1720: Added asterisk to Project Boundary heading. * BHBC-1720: Add required indicator for surveyed_all_areas (not finalized). * BHBC-1720: Changed to 'Surveyed Areas *' * BHBC-1720: Update snapshot tests * Hide MU regions from the display list (#754) * removed MU regions list from the display * update api_delete_survey sql function (#757) * date picker fix (#753) * Bhbc-1725 fix deleting funding agency error (#758) * fix funding_source delete error * Bhbc 1728 (#760) Misc UI Clean-up Fixed the report year issue Fixing version to string * BHBC-1731: Fix open api spec (#762) Fix open api specs for survey-view, survey funding sources update, and project-view * Fix permit dropdown (#759) * remove the ability to select a non-sampling permit (when editing a project) * tweak openapi spec for public project view * More openapi fixes (#764) * public attachments received attachment/reports && secured/unsecured correctly * fixed api calls for retrieve signedUrl and to get unsecured files * Email to outlook (#765) * fixed email redirect in header * make agency_project_id nullable * remove permit from the public page * BHBC-1724: Fix edit dialog control clipping. (#761) Fix edit dialog control clipping * BHBC-1727: Add 'Zoom to Boundary Extent' button to SurveyStudyArea. (#763) * BHBC-1727: Add 'Zoom to Boundary Extent' button to SurveyStudyArea. * BHBC-1727: Automatically zoom to boundary extent upon rendering survey details. * BHBC-1727: make lint-fix; make format-fix; * BHBC-1727: Make Zoom to Boundary Extent button appear on top of the map * BHBC-1727: Fix codesmell. * BHBC-1727: Use absolute 'Zoom to boundary extent' IconButton in survey area map editor dialog. * BHBC-1727: Add 'Zoom to boundary extent' IconButton to Project Location map. * BHBC-1727: lint-fix and format-fit * BHBC-1727: Made PR requested changes. * BHBC-1727: Make lint-fix. * BHBC-1727: Update snapshot tests Co-authored-by: Anissa Agahchen <[email protected]> * Fix user seed role id Co-authored-by: Nick Phura <[email protected]> Co-authored-by: jeznorth <[email protected]> Co-authored-by: Anissa Agahchen <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Nick Phura <[email protected]> Co-authored-by: Charlie Garrett-Jones <[email protected]> Co-authored-by: Kjartan <[email protected]> Co-authored-by: Shrey Patel <[email protected]> Co-authored-by: Kjartan <[email protected]> Co-authored-by: Curtis Upshall <[email protected]> * BHBC-1700: Move to Test (#774) * Fix/Enhancement: Port improved user access request functionality from Restoration, Adjust access request approval to account for existing bceid-basic-business identity sources (#771) - Port improved user access request functionality from Restoration - Better/fixed handling for approving/denying user requests - Adjust access request approval to account for existing bceid-basic-business identity sources - Existing access requests created before we accounted for bceid-basic-and-business identity sources should no longer throw an error when trying to approve/deny them. * BHBC-1730: Use centerOfMass instead of centroid for project area center (#770) * BHBC-1730: Use centerOfMass instead of centroid for project area center point. * BHBC-1736: Fix Read More/Read Less idempotence bug (#772) * BHBC-1736: Tighten qualification for string truncating * BHBC-1736: Fix null coalesce * BHBC-1736: Change variable name to be more descriptive Co-authored-by: Curtis Upshall <[email protected]> * BHBC-1700: Move to Test (#777) * Bugfix: Incorrect identity source enum (#776) - account for the fact that openapi enums are case sensitive Co-authored-by: Roland Stens <[email protected]> Co-authored-by: jeznorth <[email protected]> Co-authored-by: Anissa Agahchen <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Charlie Garrett-Jones <[email protected]> Co-authored-by: Kjartan <[email protected]> Co-authored-by: Shrey Patel <[email protected]> Co-authored-by: Kjartan <[email protected]> Co-authored-by: Curtis Upshall <[email protected]>
NickPhura
added a commit
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Sep 29, 2022
* Fix/Enhancement: Port improved user access request functionality from Restoration, Adjust access request approval to account for existing bceid-basic-business identity sources (#771) - Port improved user access request functionality from Restoration - Better/fixed handling for approving/denying user requests - Adjust access request approval to account for existing bceid-basic-business identity sources - Existing access requests created before we accounted for bceid-basic-and-business identity sources should no longer throw an error when trying to approve/deny them. * BHBC-1730: Use centerOfMass instead of centroid for project area center (#770) * BHBC-1730: Use centerOfMass instead of centroid for project area center point. * BHBC-1736: Fix Read More/Read Less idempotence bug (#772) * BHBC-1736: Tighten qualification for string truncating * BHBC-1736: Fix null coalesce * BHBC-1736: Change variable name to be more descriptive * Bugfix: Incorrect identity source enum (#776) - account for the fact that openapi enums are case sensitive * Create toDraft.yml (#779) * Create toDraft.yml * remove dependency * Bump sqlite3 from 5.0.2 to 5.0.8 in /n8n (#773) Bumps [sqlite3](https://github.com/TryGhost/node-sqlite3) from 5.0.2 to 5.0.8. - [Release notes](https://github.com/TryGhost/node-sqlite3/releases) - [Changelog](https://github.com/TryGhost/node-sqlite3/blob/master/CHANGELOG.md) - [Commits](TryGhost/node-sqlite3@v5.0.2...v5.0.8) --- updated-dependencies: - dependency-name: sqlite3 dependency-type: indirect ... Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Nick Phura <[email protected]> * Fixed horizontal autoscaler and consolidate deployment files (#781) * Fixed horizontal autoscaler and consolidate deployment files * Some config changes * Forgot one * fix * Set utilization as portion of reques, not maximum * BHBC-1778: Make resources page publicly viewable (#783) * BHBC-1776: Update docker-compose and related env vars (#782) * BHBC-1759: Fix cypress tests (#784) - Fix cypress tests - Update n8n version/config * BHBC-1755: Add backbone api env var and platform-service. (#780) * BHBC-1755: Add backbone api env var and platform-service. - Remove clamav hardcoded default values - Improve checking for required clamav env vars before initializing scanner - Add missing clamav env vars to api deployment yaml * Node upgrade as Cypress needs a newer version of node (#785) * Bump convict from 6.2.2 to 6.2.3 in /n8n (#786) Bumps [convict](https://github.com/mozilla/node-convict) from 6.2.2 to 6.2.3. - [Release notes](https://github.com/mozilla/node-convict/releases) - [Changelog](https://github.com/mozilla/node-convict/blob/master/CHANGELOG.md) - [Commits](mozilla/node-convict@v6.2.2...v6.2.3) --- updated-dependencies: - dependency-name: convict dependency-type: indirect ... Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * Updates the HPAs for APP and API (#790) * BHBC-1783: Error When Editing Purpose and Methodology (#787) Fixed an error that occurred when attempting to edit the ‘Purpose and Methodology’ section of a survey. - Updated schema validation for GET on purpose_methodology update endpoint. - BHBC-1783: Add API response validation testing to update endpoint (work in progress). - BHBC-1783: Amend platform-service and its test file w 'dwc/submission/create' endpoint. * BHBC-1775, BHBC-1809: Templates in prod are still downloaded from S3 Dev (#793) - Replace hardcoded URLs in Resources page by implementing env. vars (BHBC-1775) - Fix API response validation bugs for Project Drafts (BHBC-1809) * BHBC-1796-1810 : bug fix - xlsx observation upload not completing (#792) BHBC-1796: Bug fix - Observation points not displaying on map BHBC-1810: Bug fix - Transformation of large template file crashes API in Openshift * fix display of occurrences on full-screen view (#794) * BHBC-1789: EML Updates + Survey Service (#766) Tech debt: survey-service EML: major updates to EML creation code * BUGFIX: Strip null values from vantage code array in SQL response * Tech Debt: Fix Cypress Tests (#800) Tech Debt: Fix Cypress Tests (#800) * BHBC-1837: Fix survey attachment metadata endpoint (#801) Bug fix for survey attachment view details * BHBC-1201: Push project/survey metadata (EML) to backbone on project/survey create/update (#803) BHBC-1201: Push project/survey metadata (EML) to backbone on create/update * BHBC-1841: Remove Project/Survey Publish Buttons And Related Code (#804) - Project and survey UI no longer include publish button - API no longer has endpoints for publishing * BHBC-1868: Push Observation Data to BioHub (#805) System admin button + endpoint to submit project and survey EML + Observation data to BioHub Backbone. * BHBC-1868-2: Handle error popup for BioHub Submit, remove some old logs, enable biohub submission env var for dev. (#806) - Handle error popup for BioHub Submit - remove some old logs - enable biohub submission env var for dev * TechDebt: Update Keycloak config - add pkce method (#807) - Update keycloak config to include pkce option * TechDebt: Port latest version of DataLoader hook (and related hooks/tests) to SIMS (#809) * TechDebt: Update Template apiVersion from "v1" to "template.openshift.io/v1" (#810) * BHBC-1893/1880: Update the Composition and SRB Survey Template (#808) * BHBC-1867: Cant delete a system user that has no system role (#811) - Fix issue that prevented deleting system users that had no system role. - Fix bug that was displaying non-human users in the manage users list. * Update Sims Template Validations (#812) * BHBC-1914, 1918, 1920 (#816) Updated validation for summary templates * BHBC-1923: Update Resource Page (#814) * BHBC-1912: Remove the Table Preview for Submitted Observations and Summary Results (#815) * edits for moose srb and comp validation * add transect validation * add sheep pop comp validation survey (broken) * sheep validation functioning * goat validation functioning * fix edits for validations * trigger build * initial commit * remove Observation and Summary CSV table and ref * trigger build * fix merge conflict * more merge conflicts Co-authored-by: Anissa Agahchen <[email protected]> * BHBC-1922: Add Attachments Datra To EML (#817) * Include attachments metadata in EML - adjusted EML pub date to short ISO format - adjusted order of EML to conform with specification - adjusted database smoke test script for usage as initial data population. while application now does not throw error, issues persist and have been documented in Jira * added new elk summary template to resource page (#818) Added Elk Summary Template to Resource Page * BHBC-1930, 1931, 1932 (#820)- Elk Templates and summary results * BHBC-1547: Create Project Improvements (#819) Refactor create project page to a single form, removing the multi-step wizard * BHBC-1925: Move Permits to Survey (#813) - Adjusted permit model for model 1.2 - Adjusted db function project deletion routines - Added smoke test file - Purge old permit code from all project related components (frontend and backend) - Add CustomFieldArray Component - Move permit components/logic to Survey (from Project) * BHBC-1966: Add 2 new items to the agency codes list (#825) Add 2 new items to the agency codes list Co-authored-by: Curtis Upshall <[email protected]> Co-authored-by: Roland Stens <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Anissa Agahchen <[email protected]> Co-authored-by: Kjartan <[email protected]> Co-authored-by: AlfredRosenthal <[email protected]> Co-authored-by: Charlie Garrett-Jones <[email protected]>
NickPhura
added a commit
that referenced
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Nov 17, 2022
* Fix/Enhancement: Port improved user access request functionality from Restoration, Adjust access request approval to account for existing bceid-basic-business identity sources (#771) - Port improved user access request functionality from Restoration - Better/fixed handling for approving/denying user requests - Adjust access request approval to account for existing bceid-basic-business identity sources - Existing access requests created before we accounted for bceid-basic-and-business identity sources should no longer throw an error when trying to approve/deny them. * BHBC-1730: Use centerOfMass instead of centroid for project area center (#770) * BHBC-1730: Use centerOfMass instead of centroid for project area center point. * BHBC-1736: Fix Read More/Read Less idempotence bug (#772) * BHBC-1736: Tighten qualification for string truncating * BHBC-1736: Fix null coalesce * BHBC-1736: Change variable name to be more descriptive * Bugfix: Incorrect identity source enum (#776) - account for the fact that openapi enums are case sensitive * Create toDraft.yml (#779) * Create toDraft.yml * remove dependency * Bump sqlite3 from 5.0.2 to 5.0.8 in /n8n (#773) Bumps [sqlite3](https://github.com/TryGhost/node-sqlite3) from 5.0.2 to 5.0.8. - [Release notes](https://github.com/TryGhost/node-sqlite3/releases) - [Changelog](https://github.com/TryGhost/node-sqlite3/blob/master/CHANGELOG.md) - [Commits](TryGhost/node-sqlite3@v5.0.2...v5.0.8) --- updated-dependencies: - dependency-name: sqlite3 dependency-type: indirect ... Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Nick Phura <[email protected]> * Fixed horizontal autoscaler and consolidate deployment files (#781) * Fixed horizontal autoscaler and consolidate deployment files * Some config changes * Forgot one * fix * Set utilization as portion of reques, not maximum * BHBC-1778: Make resources page publicly viewable (#783) * BHBC-1776: Update docker-compose and related env vars (#782) * BHBC-1759: Fix cypress tests (#784) - Fix cypress tests - Update n8n version/config * BHBC-1755: Add backbone api env var and platform-service. (#780) * BHBC-1755: Add backbone api env var and platform-service. - Remove clamav hardcoded default values - Improve checking for required clamav env vars before initializing scanner - Add missing clamav env vars to api deployment yaml * Node upgrade as Cypress needs a newer version of node (#785) * Bump convict from 6.2.2 to 6.2.3 in /n8n (#786) Bumps [convict](https://github.com/mozilla/node-convict) from 6.2.2 to 6.2.3. - [Release notes](https://github.com/mozilla/node-convict/releases) - [Changelog](https://github.com/mozilla/node-convict/blob/master/CHANGELOG.md) - [Commits](mozilla/node-convict@v6.2.2...v6.2.3) --- updated-dependencies: - dependency-name: convict dependency-type: indirect ... Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * Updates the HPAs for APP and API (#790) * BHBC-1783: Error When Editing Purpose and Methodology (#787) Fixed an error that occurred when attempting to edit the ‘Purpose and Methodology’ section of a survey. - Updated schema validation for GET on purpose_methodology update endpoint. - BHBC-1783: Add API response validation testing to update endpoint (work in progress). - BHBC-1783: Amend platform-service and its test file w 'dwc/submission/create' endpoint. * BHBC-1775, BHBC-1809: Templates in prod are still downloaded from S3 Dev (#793) - Replace hardcoded URLs in Resources page by implementing env. vars (BHBC-1775) - Fix API response validation bugs for Project Drafts (BHBC-1809) * BHBC-1796-1810 : bug fix - xlsx observation upload not completing (#792) BHBC-1796: Bug fix - Observation points not displaying on map BHBC-1810: Bug fix - Transformation of large template file crashes API in Openshift * fix display of occurrences on full-screen view (#794) * BHBC-1789: EML Updates + Survey Service (#766) Tech debt: survey-service EML: major updates to EML creation code * BUGFIX: Strip null values from vantage code array in SQL response * Tech Debt: Fix Cypress Tests (#800) Tech Debt: Fix Cypress Tests (#800) * BHBC-1837: Fix survey attachment metadata endpoint (#801) Bug fix for survey attachment view details * BHBC-1201: Push project/survey metadata (EML) to backbone on project/survey create/update (#803) BHBC-1201: Push project/survey metadata (EML) to backbone on create/update * BHBC-1841: Remove Project/Survey Publish Buttons And Related Code (#804) - Project and survey UI no longer include publish button - API no longer has endpoints for publishing * BHBC-1868: Push Observation Data to BioHub (#805) System admin button + endpoint to submit project and survey EML + Observation data to BioHub Backbone. * BHBC-1868-2: Handle error popup for BioHub Submit, remove some old logs, enable biohub submission env var for dev. (#806) - Handle error popup for BioHub Submit - remove some old logs - enable biohub submission env var for dev * TechDebt: Update Keycloak config - add pkce method (#807) - Update keycloak config to include pkce option * TechDebt: Port latest version of DataLoader hook (and related hooks/tests) to SIMS (#809) * TechDebt: Update Template apiVersion from "v1" to "template.openshift.io/v1" (#810) * BHBC-1893/1880: Update the Composition and SRB Survey Template (#808) * BHBC-1867: Cant delete a system user that has no system role (#811) - Fix issue that prevented deleting system users that had no system role. - Fix bug that was displaying non-human users in the manage users list. * Update Sims Template Validations (#812) * BHBC-1914, 1918, 1920 (#816) Updated validation for summary templates * BHBC-1923: Update Resource Page (#814) * BHBC-1912: Remove the Table Preview for Submitted Observations and Summary Results (#815) * edits for moose srb and comp validation * add transect validation * add sheep pop comp validation survey (broken) * sheep validation functioning * goat validation functioning * fix edits for validations * trigger build * initial commit * remove Observation and Summary CSV table and ref * trigger build * fix merge conflict * more merge conflicts Co-authored-by: Anissa Agahchen <[email protected]> * BHBC-1922: Add Attachments Datra To EML (#817) * Include attachments metadata in EML - adjusted EML pub date to short ISO format - adjusted order of EML to conform with specification - adjusted database smoke test script for usage as initial data population. while application now does not throw error, issues persist and have been documented in Jira * added new elk summary template to resource page (#818) Added Elk Summary Template to Resource Page * BHBC-1930, 1931, 1932 (#820)- Elk Templates and summary results * BHBC-1547: Create Project Improvements (#819) Refactor create project page to a single form, removing the multi-step wizard * BHBC-1925: Move Permits to Survey (#813) - Adjusted permit model for model 1.2 - Adjusted db function project deletion routines - Added smoke test file - Purge old permit code from all project related components (frontend and backend) - Add CustomFieldArray Component - Move permit components/logic to Survey (from Project) * BHBC-1966: Add 2 new items to the agency codes list (#825) Add 2 new items to the agency codes list * BHBC-1925: added permit servce test coverage (#824) * BHBC-1904 (#822) Removed all public views/ pages and supporting tests/ SQL. All unauthenticated users will now be directed to the login page * BHBC-1949: Email notification to Users that access has been granted or denied * BHBC-1950/BHBC-1951: Import/Validate Deer Survey Templates (#832) * BHBC-1965: modifications to occurrence and summary details data model (#830) - addition of species descriptor to survey occurrence templates - addition of templates concept to survey summary details - adjusted file name Co-authored-by: Kjartan <[email protected]> * email link functioning (#833) * BHBC-1937 - Enhance MapContainer with changes from BioHub (#827) BHBC-1937: Ported MapContainer improvements over from platform: * Created new React components to encapsulate Map components and `wfs-utils` helper for rendering and selecting regional/mu layers * Updated tests and added type defs for map util functions. * BHBC-1962-1963-1982-1975: Validation refactoring and error handling (#828) * BHBC-1978: Data Administrator Permissions Are Incorrect (#838) * BHBC-1972: Delete a Draft Project (#837) * BHBC-1998, BHBC-1999 (#839) Refactored Darwin core submission endpoint, added column to track Darwin core data as JSON Co-authored-by: Anissa Agahchen <[email protected]> * BHBC:1992: bugfix - keycloak env not passed to api (#840) Fixed keycloak envs so they are passed properly to API * updated file name (#841) Renamed migration to maintain standards * BHBC-1979: Update Templates to Use New Identifiers (#835) * BHBC 2009 (#836) Added wrapped function to catch any errors thrown by database functions * BHBC-2018 (#843) Addition of security review timestamp attribute for all documents * BHBC-2052 (#847) Fixed keycloak URL for SIMS/ BioHub intake * PR fix (#844) * BHBC-1976: Update API to utilize new DB changes for processing summary result templates (#834) * BHBC-1976: Enhance summary template validation to get validation schema from database. * Created a service and repository file for summary template validation. * Determine validation schema by performing search on template name, version and taxonomic code. * Read in template name and version from XLSX custom properties. Co-authored-by: Curtis Upshall <[email protected]> Co-authored-by: Roland Stens <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Anissa Agahchen <[email protected]> Co-authored-by: Kjartan <[email protected]> Co-authored-by: AlfredRosenthal <[email protected]> Co-authored-by: Charlie Garrett-Jones <[email protected]>
NickPhura
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Nov 17, 2022
* Fix/Enhancement: Port improved user access request functionality from Restoration, Adjust access request approval to account for existing bceid-basic-business identity sources (#771) - Port improved user access request functionality from Restoration - Better/fixed handling for approving/denying user requests - Adjust access request approval to account for existing bceid-basic-business identity sources - Existing access requests created before we accounted for bceid-basic-and-business identity sources should no longer throw an error when trying to approve/deny them. * BHBC-1730: Use centerOfMass instead of centroid for project area center (#770) * BHBC-1730: Use centerOfMass instead of centroid for project area center point. * BHBC-1736: Fix Read More/Read Less idempotence bug (#772) * BHBC-1736: Tighten qualification for string truncating * BHBC-1736: Fix null coalesce * BHBC-1736: Change variable name to be more descriptive * Bugfix: Incorrect identity source enum (#776) - account for the fact that openapi enums are case sensitive * Create toDraft.yml (#779) * Create toDraft.yml * remove dependency * Bump sqlite3 from 5.0.2 to 5.0.8 in /n8n (#773) Bumps [sqlite3](https://github.com/TryGhost/node-sqlite3) from 5.0.2 to 5.0.8. - [Release notes](https://github.com/TryGhost/node-sqlite3/releases) - [Changelog](https://github.com/TryGhost/node-sqlite3/blob/master/CHANGELOG.md) - [Commits](TryGhost/node-sqlite3@v5.0.2...v5.0.8) --- updated-dependencies: - dependency-name: sqlite3 dependency-type: indirect ... Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Nick Phura <[email protected]> * Fixed horizontal autoscaler and consolidate deployment files (#781) * Fixed horizontal autoscaler and consolidate deployment files * Some config changes * Forgot one * fix * Set utilization as portion of reques, not maximum * BHBC-1778: Make resources page publicly viewable (#783) * BHBC-1776: Update docker-compose and related env vars (#782) * BHBC-1759: Fix cypress tests (#784) - Fix cypress tests - Update n8n version/config * BHBC-1755: Add backbone api env var and platform-service. (#780) * BHBC-1755: Add backbone api env var and platform-service. - Remove clamav hardcoded default values - Improve checking for required clamav env vars before initializing scanner - Add missing clamav env vars to api deployment yaml * Node upgrade as Cypress needs a newer version of node (#785) * Bump convict from 6.2.2 to 6.2.3 in /n8n (#786) Bumps [convict](https://github.com/mozilla/node-convict) from 6.2.2 to 6.2.3. - [Release notes](https://github.com/mozilla/node-convict/releases) - [Changelog](https://github.com/mozilla/node-convict/blob/master/CHANGELOG.md) - [Commits](mozilla/node-convict@v6.2.2...v6.2.3) --- updated-dependencies: - dependency-name: convict dependency-type: indirect ... Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * Updates the HPAs for APP and API (#790) * BHBC-1783: Error When Editing Purpose and Methodology (#787) Fixed an error that occurred when attempting to edit the ‘Purpose and Methodology’ section of a survey. - Updated schema validation for GET on purpose_methodology update endpoint. - BHBC-1783: Add API response validation testing to update endpoint (work in progress). - BHBC-1783: Amend platform-service and its test file w 'dwc/submission/create' endpoint. * BHBC-1775, BHBC-1809: Templates in prod are still downloaded from S3 Dev (#793) - Replace hardcoded URLs in Resources page by implementing env. vars (BHBC-1775) - Fix API response validation bugs for Project Drafts (BHBC-1809) * BHBC-1796-1810 : bug fix - xlsx observation upload not completing (#792) BHBC-1796: Bug fix - Observation points not displaying on map BHBC-1810: Bug fix - Transformation of large template file crashes API in Openshift * fix display of occurrences on full-screen view (#794) * BHBC-1789: EML Updates + Survey Service (#766) Tech debt: survey-service EML: major updates to EML creation code * BUGFIX: Strip null values from vantage code array in SQL response * Tech Debt: Fix Cypress Tests (#800) Tech Debt: Fix Cypress Tests (#800) * BHBC-1837: Fix survey attachment metadata endpoint (#801) Bug fix for survey attachment view details * BHBC-1201: Push project/survey metadata (EML) to backbone on project/survey create/update (#803) BHBC-1201: Push project/survey metadata (EML) to backbone on create/update * BHBC-1841: Remove Project/Survey Publish Buttons And Related Code (#804) - Project and survey UI no longer include publish button - API no longer has endpoints for publishing * BHBC-1868: Push Observation Data to BioHub (#805) System admin button + endpoint to submit project and survey EML + Observation data to BioHub Backbone. * BHBC-1868-2: Handle error popup for BioHub Submit, remove some old logs, enable biohub submission env var for dev. (#806) - Handle error popup for BioHub Submit - remove some old logs - enable biohub submission env var for dev * TechDebt: Update Keycloak config - add pkce method (#807) - Update keycloak config to include pkce option * TechDebt: Port latest version of DataLoader hook (and related hooks/tests) to SIMS (#809) * TechDebt: Update Template apiVersion from "v1" to "template.openshift.io/v1" (#810) * BHBC-1893/1880: Update the Composition and SRB Survey Template (#808) * BHBC-1867: Cant delete a system user that has no system role (#811) - Fix issue that prevented deleting system users that had no system role. - Fix bug that was displaying non-human users in the manage users list. * Update Sims Template Validations (#812) * BHBC-1914, 1918, 1920 (#816) Updated validation for summary templates * BHBC-1923: Update Resource Page (#814) * BHBC-1912: Remove the Table Preview for Submitted Observations and Summary Results (#815) * edits for moose srb and comp validation * add transect validation * add sheep pop comp validation survey (broken) * sheep validation functioning * goat validation functioning * fix edits for validations * trigger build * initial commit * remove Observation and Summary CSV table and ref * trigger build * fix merge conflict * more merge conflicts Co-authored-by: Anissa Agahchen <[email protected]> * BHBC-1922: Add Attachments Datra To EML (#817) * Include attachments metadata in EML - adjusted EML pub date to short ISO format - adjusted order of EML to conform with specification - adjusted database smoke test script for usage as initial data population. while application now does not throw error, issues persist and have been documented in Jira * added new elk summary template to resource page (#818) Added Elk Summary Template to Resource Page * BHBC-1930, 1931, 1932 (#820)- Elk Templates and summary results * BHBC-1547: Create Project Improvements (#819) Refactor create project page to a single form, removing the multi-step wizard * BHBC-1925: Move Permits to Survey (#813) - Adjusted permit model for model 1.2 - Adjusted db function project deletion routines - Added smoke test file - Purge old permit code from all project related components (frontend and backend) - Add CustomFieldArray Component - Move permit components/logic to Survey (from Project) * BHBC-1966: Add 2 new items to the agency codes list (#825) Add 2 new items to the agency codes list * BHBC-1925: added permit servce test coverage (#824) * BHBC-1904 (#822) Removed all public views/ pages and supporting tests/ SQL. All unauthenticated users will now be directed to the login page * BHBC-1949: Email notification to Users that access has been granted or denied * BHBC-1950/BHBC-1951: Import/Validate Deer Survey Templates (#832) * BHBC-1965: modifications to occurrence and summary details data model (#830) - addition of species descriptor to survey occurrence templates - addition of templates concept to survey summary details - adjusted file name Co-authored-by: Kjartan <[email protected]> * email link functioning (#833) * BHBC-1937 - Enhance MapContainer with changes from BioHub (#827) BHBC-1937: Ported MapContainer improvements over from platform: * Created new React components to encapsulate Map components and `wfs-utils` helper for rendering and selecting regional/mu layers * Updated tests and added type defs for map util functions. * BHBC-1962-1963-1982-1975: Validation refactoring and error handling (#828) * BHBC-1978: Data Administrator Permissions Are Incorrect (#838) * BHBC-1972: Delete a Draft Project (#837) * BHBC-1998, BHBC-1999 (#839) Refactored Darwin core submission endpoint, added column to track Darwin core data as JSON Co-authored-by: Anissa Agahchen <[email protected]> * BHBC:1992: bugfix - keycloak env not passed to api (#840) Fixed keycloak envs so they are passed properly to API * updated file name (#841) Renamed migration to maintain standards * BHBC-1979: Update Templates to Use New Identifiers (#835) * BHBC 2009 (#836) Added wrapped function to catch any errors thrown by database functions * BHBC-2018 (#843) Addition of security review timestamp attribute for all documents * BHBC-2052 (#847) Fixed keycloak URL for SIMS/ BioHub intake * PR fix (#844) * BHBC-1976: Update API to utilize new DB changes for processing summary result templates (#834) * BHBC-1976: Enhance summary template validation to get validation schema from database. * Created a service and repository file for summary template validation. * Determine validation schema by performing search on template name, version and taxonomic code. * Read in template name and version from XLSX custom properties. * commit empty 2 * commit empty 3 * commit empty 4 * change readme * change readme 2 Co-authored-by: Curtis Upshall <[email protected]> Co-authored-by: Roland Stens <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Anissa Agahchen <[email protected]> Co-authored-by: Kjartan <[email protected]> Co-authored-by: AlfredRosenthal <[email protected]> Co-authored-by: Charlie Garrett-Jones <[email protected]>
KjartanE
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Nov 17, 2022
* BHBC-1966: Push Dev To Test (#826) * Fix/Enhancement: Port improved user access request functionality from Restoration, Adjust access request approval to account for existing bceid-basic-business identity sources (#771) - Port improved user access request functionality from Restoration - Better/fixed handling for approving/denying user requests - Adjust access request approval to account for existing bceid-basic-business identity sources - Existing access requests created before we accounted for bceid-basic-and-business identity sources should no longer throw an error when trying to approve/deny them. * BHBC-1730: Use centerOfMass instead of centroid for project area center (#770) * BHBC-1730: Use centerOfMass instead of centroid for project area center point. * BHBC-1736: Fix Read More/Read Less idempotence bug (#772) * BHBC-1736: Tighten qualification for string truncating * BHBC-1736: Fix null coalesce * BHBC-1736: Change variable name to be more descriptive * Bugfix: Incorrect identity source enum (#776) - account for the fact that openapi enums are case sensitive * Create toDraft.yml (#779) * Create toDraft.yml * remove dependency * Bump sqlite3 from 5.0.2 to 5.0.8 in /n8n (#773) Bumps [sqlite3](https://github.com/TryGhost/node-sqlite3) from 5.0.2 to 5.0.8. - [Release notes](https://github.com/TryGhost/node-sqlite3/releases) - [Changelog](https://github.com/TryGhost/node-sqlite3/blob/master/CHANGELOG.md) - [Commits](TryGhost/node-sqlite3@v5.0.2...v5.0.8) --- updated-dependencies: - dependency-name: sqlite3 dependency-type: indirect ... Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Nick Phura <[email protected]> * Fixed horizontal autoscaler and consolidate deployment files (#781) * Fixed horizontal autoscaler and consolidate deployment files * Some config changes * Forgot one * fix * Set utilization as portion of reques, not maximum * BHBC-1778: Make resources page publicly viewable (#783) * BHBC-1776: Update docker-compose and related env vars (#782) * BHBC-1759: Fix cypress tests (#784) - Fix cypress tests - Update n8n version/config * BHBC-1755: Add backbone api env var and platform-service. (#780) * BHBC-1755: Add backbone api env var and platform-service. - Remove clamav hardcoded default values - Improve checking for required clamav env vars before initializing scanner - Add missing clamav env vars to api deployment yaml * Node upgrade as Cypress needs a newer version of node (#785) * Bump convict from 6.2.2 to 6.2.3 in /n8n (#786) Bumps [convict](https://github.com/mozilla/node-convict) from 6.2.2 to 6.2.3. - [Release notes](https://github.com/mozilla/node-convict/releases) - [Changelog](https://github.com/mozilla/node-convict/blob/master/CHANGELOG.md) - [Commits](mozilla/node-convict@v6.2.2...v6.2.3) --- updated-dependencies: - dependency-name: convict dependency-type: indirect ... Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * Updates the HPAs for APP and API (#790) * BHBC-1783: Error When Editing Purpose and Methodology (#787) Fixed an error that occurred when attempting to edit the ‘Purpose and Methodology’ section of a survey. - Updated schema validation for GET on purpose_methodology update endpoint. - BHBC-1783: Add API response validation testing to update endpoint (work in progress). - BHBC-1783: Amend platform-service and its test file w 'dwc/submission/create' endpoint. * BHBC-1775, BHBC-1809: Templates in prod are still downloaded from S3 Dev (#793) - Replace hardcoded URLs in Resources page by implementing env. vars (BHBC-1775) - Fix API response validation bugs for Project Drafts (BHBC-1809) * BHBC-1796-1810 : bug fix - xlsx observation upload not completing (#792) BHBC-1796: Bug fix - Observation points not displaying on map BHBC-1810: Bug fix - Transformation of large template file crashes API in Openshift * fix display of occurrences on full-screen view (#794) * BHBC-1789: EML Updates + Survey Service (#766) Tech debt: survey-service EML: major updates to EML creation code * BUGFIX: Strip null values from vantage code array in SQL response * Tech Debt: Fix Cypress Tests (#800) Tech Debt: Fix Cypress Tests (#800) * BHBC-1837: Fix survey attachment metadata endpoint (#801) Bug fix for survey attachment view details * BHBC-1201: Push project/survey metadata (EML) to backbone on project/survey create/update (#803) BHBC-1201: Push project/survey metadata (EML) to backbone on create/update * BHBC-1841: Remove Project/Survey Publish Buttons And Related Code (#804) - Project and survey UI no longer include publish button - API no longer has endpoints for publishing * BHBC-1868: Push Observation Data to BioHub (#805) System admin button + endpoint to submit project and survey EML + Observation data to BioHub Backbone. * BHBC-1868-2: Handle error popup for BioHub Submit, remove some old logs, enable biohub submission env var for dev. (#806) - Handle error popup for BioHub Submit - remove some old logs - enable biohub submission env var for dev * TechDebt: Update Keycloak config - add pkce method (#807) - Update keycloak config to include pkce option * TechDebt: Port latest version of DataLoader hook (and related hooks/tests) to SIMS (#809) * TechDebt: Update Template apiVersion from "v1" to "template.openshift.io/v1" (#810) * BHBC-1893/1880: Update the Composition and SRB Survey Template (#808) * BHBC-1867: Cant delete a system user that has no system role (#811) - Fix issue that prevented deleting system users that had no system role. - Fix bug that was displaying non-human users in the manage users list. * Update Sims Template Validations (#812) * BHBC-1914, 1918, 1920 (#816) Updated validation for summary templates * BHBC-1923: Update Resource Page (#814) * BHBC-1912: Remove the Table Preview for Submitted Observations and Summary Results (#815) * edits for moose srb and comp validation * add transect validation * add sheep pop comp validation survey (broken) * sheep validation functioning * goat validation functioning * fix edits for validations * trigger build * initial commit * remove Observation and Summary CSV table and ref * trigger build * fix merge conflict * more merge conflicts Co-authored-by: Anissa Agahchen <[email protected]> * BHBC-1922: Add Attachments Datra To EML (#817) * Include attachments metadata in EML - adjusted EML pub date to short ISO format - adjusted order of EML to conform with specification - adjusted database smoke test script for usage as initial data population. while application now does not throw error, issues persist and have been documented in Jira * added new elk summary template to resource page (#818) Added Elk Summary Template to Resource Page * BHBC-1930, 1931, 1932 (#820)- Elk Templates and summary results * BHBC-1547: Create Project Improvements (#819) Refactor create project page to a single form, removing the multi-step wizard * BHBC-1925: Move Permits to Survey (#813) - Adjusted permit model for model 1.2 - Adjusted db function project deletion routines - Added smoke test file - Purge old permit code from all project related components (frontend and backend) - Add CustomFieldArray Component - Move permit components/logic to Survey (from Project) * BHBC-1966: Add 2 new items to the agency codes list (#825) Add 2 new items to the agency codes list Co-authored-by: Curtis Upshall <[email protected]> Co-authored-by: Roland Stens <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Anissa Agahchen <[email protected]> Co-authored-by: Kjartan <[email protected]> Co-authored-by: AlfredRosenthal <[email protected]> Co-authored-by: Charlie Garrett-Jones <[email protected]> * Clean-up / Refactor Project Details and Related Components * Update Project List Page / Remove Unused Functionality from Attachments List * Standardize Title Container Structure and Styling * Cleanup Title Container Alignment and Spacing * Resource Page Clean-up * Resource Page Clean-up * Manage Users Page Clean-up * Users Interface Clean-up * dialog setup * Formatting Updates * Project Details and Component Clean-up * Edit Page functioning errors still present * UI Layout Updates * UI Cleanup * Clean-up Front-end for Edit Project Page * UI Updates for Create / Edit Project UI's * fix iucn and funding edits * Project Detail Component Clean-up * UI Clean-up * Fix one line * fix save and cancel buttons * Spacing clean-up * Test rework more work to be done * Test to Dev (#850) Prepping dev for test release * User Details Page Cleanup * Fix Naming Conventions * Finish fix all broken tests Co-authored-by: Nick Phura <[email protected]> Co-authored-by: Curtis Upshall <[email protected]> Co-authored-by: Roland Stens <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Anissa Agahchen <[email protected]> Co-authored-by: AlfredRosenthal <[email protected]> Co-authored-by: Charlie Garrett-Jones <[email protected]> Co-authored-by: jeznorth <[email protected]> Co-authored-by: AlfredRosenthal <[email protected]>
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this pull request
Nov 17, 2022
* BHBC-1966: Push Dev To Test (#826) * Fix/Enhancement: Port improved user access request functionality from Restoration, Adjust access request approval to account for existing bceid-basic-business identity sources (#771) - Port improved user access request functionality from Restoration - Better/fixed handling for approving/denying user requests - Adjust access request approval to account for existing bceid-basic-business identity sources - Existing access requests created before we accounted for bceid-basic-and-business identity sources should no longer throw an error when trying to approve/deny them. * BHBC-1730: Use centerOfMass instead of centroid for project area center (#770) * BHBC-1730: Use centerOfMass instead of centroid for project area center point. * BHBC-1736: Fix Read More/Read Less idempotence bug (#772) * BHBC-1736: Tighten qualification for string truncating * BHBC-1736: Fix null coalesce * BHBC-1736: Change variable name to be more descriptive * Bugfix: Incorrect identity source enum (#776) - account for the fact that openapi enums are case sensitive * Create toDraft.yml (#779) * Create toDraft.yml * remove dependency * Bump sqlite3 from 5.0.2 to 5.0.8 in /n8n (#773) Bumps [sqlite3](https://github.com/TryGhost/node-sqlite3) from 5.0.2 to 5.0.8. - [Release notes](https://github.com/TryGhost/node-sqlite3/releases) - [Changelog](https://github.com/TryGhost/node-sqlite3/blob/master/CHANGELOG.md) - [Commits](TryGhost/node-sqlite3@v5.0.2...v5.0.8) --- updated-dependencies: - dependency-name: sqlite3 dependency-type: indirect ... Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Nick Phura <[email protected]> * Fixed horizontal autoscaler and consolidate deployment files (#781) * Fixed horizontal autoscaler and consolidate deployment files * Some config changes * Forgot one * fix * Set utilization as portion of reques, not maximum * BHBC-1778: Make resources page publicly viewable (#783) * BHBC-1776: Update docker-compose and related env vars (#782) * BHBC-1759: Fix cypress tests (#784) - Fix cypress tests - Update n8n version/config * BHBC-1755: Add backbone api env var and platform-service. (#780) * BHBC-1755: Add backbone api env var and platform-service. - Remove clamav hardcoded default values - Improve checking for required clamav env vars before initializing scanner - Add missing clamav env vars to api deployment yaml * Node upgrade as Cypress needs a newer version of node (#785) * Bump convict from 6.2.2 to 6.2.3 in /n8n (#786) Bumps [convict](https://github.com/mozilla/node-convict) from 6.2.2 to 6.2.3. - [Release notes](https://github.com/mozilla/node-convict/releases) - [Changelog](https://github.com/mozilla/node-convict/blob/master/CHANGELOG.md) - [Commits](mozilla/node-convict@v6.2.2...v6.2.3) --- updated-dependencies: - dependency-name: convict dependency-type: indirect ... Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * Updates the HPAs for APP and API (#790) * BHBC-1783: Error When Editing Purpose and Methodology (#787) Fixed an error that occurred when attempting to edit the ‘Purpose and Methodology’ section of a survey. - Updated schema validation for GET on purpose_methodology update endpoint. - BHBC-1783: Add API response validation testing to update endpoint (work in progress). - BHBC-1783: Amend platform-service and its test file w 'dwc/submission/create' endpoint. * BHBC-1775, BHBC-1809: Templates in prod are still downloaded from S3 Dev (#793) - Replace hardcoded URLs in Resources page by implementing env. vars (BHBC-1775) - Fix API response validation bugs for Project Drafts (BHBC-1809) * BHBC-1796-1810 : bug fix - xlsx observation upload not completing (#792) BHBC-1796: Bug fix - Observation points not displaying on map BHBC-1810: Bug fix - Transformation of large template file crashes API in Openshift * fix display of occurrences on full-screen view (#794) * BHBC-1789: EML Updates + Survey Service (#766) Tech debt: survey-service EML: major updates to EML creation code * BUGFIX: Strip null values from vantage code array in SQL response * Tech Debt: Fix Cypress Tests (#800) Tech Debt: Fix Cypress Tests (#800) * BHBC-1837: Fix survey attachment metadata endpoint (#801) Bug fix for survey attachment view details * BHBC-1201: Push project/survey metadata (EML) to backbone on project/survey create/update (#803) BHBC-1201: Push project/survey metadata (EML) to backbone on create/update * BHBC-1841: Remove Project/Survey Publish Buttons And Related Code (#804) - Project and survey UI no longer include publish button - API no longer has endpoints for publishing * BHBC-1868: Push Observation Data to BioHub (#805) System admin button + endpoint to submit project and survey EML + Observation data to BioHub Backbone. * BHBC-1868-2: Handle error popup for BioHub Submit, remove some old logs, enable biohub submission env var for dev. (#806) - Handle error popup for BioHub Submit - remove some old logs - enable biohub submission env var for dev * TechDebt: Update Keycloak config - add pkce method (#807) - Update keycloak config to include pkce option * TechDebt: Port latest version of DataLoader hook (and related hooks/tests) to SIMS (#809) * TechDebt: Update Template apiVersion from "v1" to "template.openshift.io/v1" (#810) * BHBC-1893/1880: Update the Composition and SRB Survey Template (#808) * BHBC-1867: Cant delete a system user that has no system role (#811) - Fix issue that prevented deleting system users that had no system role. - Fix bug that was displaying non-human users in the manage users list. * Update Sims Template Validations (#812) * BHBC-1914, 1918, 1920 (#816) Updated validation for summary templates * BHBC-1923: Update Resource Page (#814) * BHBC-1912: Remove the Table Preview for Submitted Observations and Summary Results (#815) * edits for moose srb and comp validation * add transect validation * add sheep pop comp validation survey (broken) * sheep validation functioning * goat validation functioning * fix edits for validations * trigger build * initial commit * remove Observation and Summary CSV table and ref * trigger build * fix merge conflict * more merge conflicts Co-authored-by: Anissa Agahchen <[email protected]> * BHBC-1922: Add Attachments Datra To EML (#817) * Include attachments metadata in EML - adjusted EML pub date to short ISO format - adjusted order of EML to conform with specification - adjusted database smoke test script for usage as initial data population. while application now does not throw error, issues persist and have been documented in Jira * added new elk summary template to resource page (#818) Added Elk Summary Template to Resource Page * BHBC-1930, 1931, 1932 (#820)- Elk Templates and summary results * BHBC-1547: Create Project Improvements (#819) Refactor create project page to a single form, removing the multi-step wizard * BHBC-1925: Move Permits to Survey (#813) - Adjusted permit model for model 1.2 - Adjusted db function project deletion routines - Added smoke test file - Purge old permit code from all project related components (frontend and backend) - Add CustomFieldArray Component - Move permit components/logic to Survey (from Project) * BHBC-1966: Add 2 new items to the agency codes list (#825) Add 2 new items to the agency codes list Co-authored-by: Curtis Upshall <[email protected]> Co-authored-by: Roland Stens <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Anissa Agahchen <[email protected]> Co-authored-by: Kjartan <[email protected]> Co-authored-by: AlfredRosenthal <[email protected]> Co-authored-by: Charlie Garrett-Jones <[email protected]> * Clean-up / Refactor Project Details and Related Components * Update Project List Page / Remove Unused Functionality from Attachments List * Standardize Title Container Structure and Styling * Cleanup Title Container Alignment and Spacing * Resource Page Clean-up * Resource Page Clean-up * Manage Users Page Clean-up * Users Interface Clean-up * dialog setup * Formatting Updates * Project Details and Component Clean-up * Edit Page functioning errors still present * UI Layout Updates * UI Cleanup * Clean-up Front-end for Edit Project Page * UI Updates for Create / Edit Project UI's * fix iucn and funding edits * BHBC-2052 (#847) Fixed keycloak URL for SIMS/ BioHub intake * PR fix (#844) * Project Detail Component Clean-up * UI Clean-up * Fix one line * fix save and cancel buttons * Spacing clean-up * BHBC-1976: Update API to utilize new DB changes for processing summary result templates (#834) * BHBC-1976: Enhance summary template validation to get validation schema from database. * Created a service and repository file for summary template validation. * Determine validation schema by performing search on template name, version and taxonomic code. * Read in template name and version from XLSX custom properties. * Test rework more work to be done * Test to Dev (#850) Prepping dev for test release * User Details Page Cleanup * Fix Naming Conventions * Finish fix all broken tests Co-authored-by: Nick Phura <[email protected]> Co-authored-by: Curtis Upshall <[email protected]> Co-authored-by: Roland Stens <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Anissa Agahchen <[email protected]> Co-authored-by: AlfredRosenthal <[email protected]> Co-authored-by: Charlie Garrett-Jones <[email protected]> Co-authored-by: jeznorth <[email protected]> Co-authored-by: AlfredRosenthal <[email protected]>
AlfredRosenthal
added a commit
that referenced
this pull request
Nov 23, 2022
* BHBC-2058: Edit Project as a Single Page / General UI Clean-up (#856) * BHBC-1966: Push Dev To Test (#826) * Fix/Enhancement: Port improved user access request functionality from Restoration, Adjust access request approval to account for existing bceid-basic-business identity sources (#771) - Port improved user access request functionality from Restoration - Better/fixed handling for approving/denying user requests - Adjust access request approval to account for existing bceid-basic-business identity sources - Existing access requests created before we accounted for bceid-basic-and-business identity sources should no longer throw an error when trying to approve/deny them. * BHBC-1730: Use centerOfMass instead of centroid for project area center (#770) * BHBC-1730: Use centerOfMass instead of centroid for project area center point. * BHBC-1736: Fix Read More/Read Less idempotence bug (#772) * BHBC-1736: Tighten qualification for string truncating * BHBC-1736: Fix null coalesce * BHBC-1736: Change variable name to be more descriptive * Bugfix: Incorrect identity source enum (#776) - account for the fact that openapi enums are case sensitive * Create toDraft.yml (#779) * Create toDraft.yml * remove dependency * Bump sqlite3 from 5.0.2 to 5.0.8 in /n8n (#773) Bumps [sqlite3](https://github.com/TryGhost/node-sqlite3) from 5.0.2 to 5.0.8. - [Release notes](https://github.com/TryGhost/node-sqlite3/releases) - [Changelog](https://github.com/TryGhost/node-sqlite3/blob/master/CHANGELOG.md) - [Commits](TryGhost/node-sqlite3@v5.0.2...v5.0.8) --- updated-dependencies: - dependency-name: sqlite3 dependency-type: indirect ... Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Nick Phura <[email protected]> * Fixed horizontal autoscaler and consolidate deployment files (#781) * Fixed horizontal autoscaler and consolidate deployment files * Some config changes * Forgot one * fix * Set utilization as portion of reques, not maximum * BHBC-1778: Make resources page publicly viewable (#783) * BHBC-1776: Update docker-compose and related env vars (#782) * BHBC-1759: Fix cypress tests (#784) - Fix cypress tests - Update n8n version/config * BHBC-1755: Add backbone api env var and platform-service. (#780) * BHBC-1755: Add backbone api env var and platform-service. - Remove clamav hardcoded default values - Improve checking for required clamav env vars before initializing scanner - Add missing clamav env vars to api deployment yaml * Node upgrade as Cypress needs a newer version of node (#785) * Bump convict from 6.2.2 to 6.2.3 in /n8n (#786) Bumps [convict](https://github.com/mozilla/node-convict) from 6.2.2 to 6.2.3. - [Release notes](https://github.com/mozilla/node-convict/releases) - [Changelog](https://github.com/mozilla/node-convict/blob/master/CHANGELOG.md) - [Commits](mozilla/node-convict@v6.2.2...v6.2.3) --- updated-dependencies: - dependency-name: convict dependency-type: indirect ... Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * Updates the HPAs for APP and API (#790) * BHBC-1783: Error When Editing Purpose and Methodology (#787) Fixed an error that occurred when attempting to edit the ‘Purpose and Methodology’ section of a survey. - Updated schema validation for GET on purpose_methodology update endpoint. - BHBC-1783: Add API response validation testing to update endpoint (work in progress). - BHBC-1783: Amend platform-service and its test file w 'dwc/submission/create' endpoint. * BHBC-1775, BHBC-1809: Templates in prod are still downloaded from S3 Dev (#793) - Replace hardcoded URLs in Resources page by implementing env. vars (BHBC-1775) - Fix API response validation bugs for Project Drafts (BHBC-1809) * BHBC-1796-1810 : bug fix - xlsx observation upload not completing (#792) BHBC-1796: Bug fix - Observation points not displaying on map BHBC-1810: Bug fix - Transformation of large template file crashes API in Openshift * fix display of occurrences on full-screen view (#794) * BHBC-1789: EML Updates + Survey Service (#766) Tech debt: survey-service EML: major updates to EML creation code * BUGFIX: Strip null values from vantage code array in SQL response * Tech Debt: Fix Cypress Tests (#800) Tech Debt: Fix Cypress Tests (#800) * BHBC-1837: Fix survey attachment metadata endpoint (#801) Bug fix for survey attachment view details * BHBC-1201: Push project/survey metadata (EML) to backbone on project/survey create/update (#803) BHBC-1201: Push project/survey metadata (EML) to backbone on create/update * BHBC-1841: Remove Project/Survey Publish Buttons And Related Code (#804) - Project and survey UI no longer include publish button - API no longer has endpoints for publishing * BHBC-1868: Push Observation Data to BioHub (#805) System admin button + endpoint to submit project and survey EML + Observation data to BioHub Backbone. * BHBC-1868-2: Handle error popup for BioHub Submit, remove some old logs, enable biohub submission env var for dev. (#806) - Handle error popup for BioHub Submit - remove some old logs - enable biohub submission env var for dev * TechDebt: Update Keycloak config - add pkce method (#807) - Update keycloak config to include pkce option * TechDebt: Port latest version of DataLoader hook (and related hooks/tests) to SIMS (#809) * TechDebt: Update Template apiVersion from "v1" to "template.openshift.io/v1" (#810) * BHBC-1893/1880: Update the Composition and SRB Survey Template (#808) * BHBC-1867: Cant delete a system user that has no system role (#811) - Fix issue that prevented deleting system users that had no system role. - Fix bug that was displaying non-human users in the manage users list. * Update Sims Template Validations (#812) * BHBC-1914, 1918, 1920 (#816) Updated validation for summary templates * BHBC-1923: Update Resource Page (#814) * BHBC-1912: Remove the Table Preview for Submitted Observations and Summary Results (#815) * edits for moose srb and comp validation * add transect validation * add sheep pop comp validation survey (broken) * sheep validation functioning * goat validation functioning * fix edits for validations * trigger build * initial commit * remove Observation and Summary CSV table and ref * trigger build * fix merge conflict * more merge conflicts Co-authored-by: Anissa Agahchen <[email protected]> * BHBC-1922: Add Attachments Datra To EML (#817) * Include attachments metadata in EML - adjusted EML pub date to short ISO format - adjusted order of EML to conform with specification - adjusted database smoke test script for usage as initial data population. while application now does not throw error, issues persist and have been documented in Jira * added new elk summary template to resource page (#818) Added Elk Summary Template to Resource Page * BHBC-1930, 1931, 1932 (#820)- Elk Templates and summary results * BHBC-1547: Create Project Improvements (#819) Refactor create project page to a single form, removing the multi-step wizard * BHBC-1925: Move Permits to Survey (#813) - Adjusted permit model for model 1.2 - Adjusted db function project deletion routines - Added smoke test file - Purge old permit code from all project related components (frontend and backend) - Add CustomFieldArray Component - Move permit components/logic to Survey (from Project) * BHBC-1966: Add 2 new items to the agency codes list (#825) Add 2 new items to the agency codes list Co-authored-by: Curtis Upshall <[email protected]> Co-authored-by: Roland Stens <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Anissa Agahchen <[email protected]> Co-authored-by: Kjartan <[email protected]> Co-authored-by: AlfredRosenthal <[email protected]> Co-authored-by: Charlie Garrett-Jones <[email protected]> * Clean-up / Refactor Project Details and Related Components * Update Project List Page / Remove Unused Functionality from Attachments List * Standardize Title Container Structure and Styling * Cleanup Title Container Alignment and Spacing * Resource Page Clean-up * Resource Page Clean-up * Manage Users Page Clean-up * Users Interface Clean-up * dialog setup * Formatting Updates * Project Details and Component Clean-up * Edit Page functioning errors still present * UI Layout Updates * UI Cleanup * Clean-up Front-end for Edit Project Page * UI Updates for Create / Edit Project UI's * fix iucn and funding edits * Project Detail Component Clean-up * UI Clean-up * Fix one line * fix save and cancel buttons * Spacing clean-up * Test rework more work to be done * Test to Dev (#850) Prepping dev for test release * User Details Page Cleanup * Fix Naming Conventions * Finish fix all broken tests Co-authored-by: Nick Phura <[email protected]> Co-authored-by: Curtis Upshall <[email protected]> Co-authored-by: Roland Stens <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Anissa Agahchen <[email protected]> Co-authored-by: AlfredRosenthal <[email protected]> Co-authored-by: Charlie Garrett-Jones <[email protected]> Co-authored-by: jeznorth <[email protected]> Co-authored-by: AlfredRosenthal <[email protected]> * Revert "BHBC-2058: Edit Project as a Single Page / General UI Clean-up (#856)" (#857) This reverts commit 5c1cd58. * BHBC-1097: Use attachment-service for getProjectAttachments and getProjectReportAttachments * BHBC-1097: implement project attachment get methods in service and repo files * BHBC-1097: Update project attachments list endpoint to use service methods * BHBC-1097: Sepearate project attachments and report attachments * BHBC-1097: Attachment repo and service typedef refactor * BHBC-1097: Show status for project attachment * BHBC-1097: Report status implemented for projects * BHBC-1097: Run make fix * BHBC-1097: Remove commented code Co-authored-by: Kjartan <[email protected]> Co-authored-by: Nick Phura <[email protected]> Co-authored-by: Roland Stens <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Anissa Agahchen <[email protected]> Co-authored-by: AlfredRosenthal <[email protected]> Co-authored-by: Charlie Garrett-Jones <[email protected]> Co-authored-by: jeznorth <[email protected]> Co-authored-by: AlfredRosenthal <[email protected]>
curtisupshall
added a commit
that referenced
this pull request
Nov 25, 2022
* BHBC-2058: Edit Project as a Single Page / General UI Clean-up (#856) * BHBC-1966: Push Dev To Test (#826) * Fix/Enhancement: Port improved user access request functionality from Restoration, Adjust access request approval to account for existing bceid-basic-business identity sources (#771) - Port improved user access request functionality from Restoration - Better/fixed handling for approving/denying user requests - Adjust access request approval to account for existing bceid-basic-business identity sources - Existing access requests created before we accounted for bceid-basic-and-business identity sources should no longer throw an error when trying to approve/deny them. * BHBC-1730: Use centerOfMass instead of centroid for project area center (#770) * BHBC-1730: Use centerOfMass instead of centroid for project area center point. * BHBC-1736: Fix Read More/Read Less idempotence bug (#772) * BHBC-1736: Tighten qualification for string truncating * BHBC-1736: Fix null coalesce * BHBC-1736: Change variable name to be more descriptive * Bugfix: Incorrect identity source enum (#776) - account for the fact that openapi enums are case sensitive * Create toDraft.yml (#779) * Create toDraft.yml * remove dependency * Bump sqlite3 from 5.0.2 to 5.0.8 in /n8n (#773) Bumps [sqlite3](https://github.com/TryGhost/node-sqlite3) from 5.0.2 to 5.0.8. - [Release notes](https://github.com/TryGhost/node-sqlite3/releases) - [Changelog](https://github.com/TryGhost/node-sqlite3/blob/master/CHANGELOG.md) - [Commits](TryGhost/node-sqlite3@v5.0.2...v5.0.8) --- updated-dependencies: - dependency-name: sqlite3 dependency-type: indirect ... Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Nick Phura <[email protected]> * Fixed horizontal autoscaler and consolidate deployment files (#781) * Fixed horizontal autoscaler and consolidate deployment files * Some config changes * Forgot one * fix * Set utilization as portion of reques, not maximum * BHBC-1778: Make resources page publicly viewable (#783) * BHBC-1776: Update docker-compose and related env vars (#782) * BHBC-1759: Fix cypress tests (#784) - Fix cypress tests - Update n8n version/config * BHBC-1755: Add backbone api env var and platform-service. (#780) * BHBC-1755: Add backbone api env var and platform-service. - Remove clamav hardcoded default values - Improve checking for required clamav env vars before initializing scanner - Add missing clamav env vars to api deployment yaml * Node upgrade as Cypress needs a newer version of node (#785) * Bump convict from 6.2.2 to 6.2.3 in /n8n (#786) Bumps [convict](https://github.com/mozilla/node-convict) from 6.2.2 to 6.2.3. - [Release notes](https://github.com/mozilla/node-convict/releases) - [Changelog](https://github.com/mozilla/node-convict/blob/master/CHANGELOG.md) - [Commits](mozilla/node-convict@v6.2.2...v6.2.3) --- updated-dependencies: - dependency-name: convict dependency-type: indirect ... Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * Updates the HPAs for APP and API (#790) * BHBC-1783: Error When Editing Purpose and Methodology (#787) Fixed an error that occurred when attempting to edit the ‘Purpose and Methodology’ section of a survey. - Updated schema validation for GET on purpose_methodology update endpoint. - BHBC-1783: Add API response validation testing to update endpoint (work in progress). - BHBC-1783: Amend platform-service and its test file w 'dwc/submission/create' endpoint. * BHBC-1775, BHBC-1809: Templates in prod are still downloaded from S3 Dev (#793) - Replace hardcoded URLs in Resources page by implementing env. vars (BHBC-1775) - Fix API response validation bugs for Project Drafts (BHBC-1809) * BHBC-1796-1810 : bug fix - xlsx observation upload not completing (#792) BHBC-1796: Bug fix - Observation points not displaying on map BHBC-1810: Bug fix - Transformation of large template file crashes API in Openshift * fix display of occurrences on full-screen view (#794) * BHBC-1789: EML Updates + Survey Service (#766) Tech debt: survey-service EML: major updates to EML creation code * BUGFIX: Strip null values from vantage code array in SQL response * Tech Debt: Fix Cypress Tests (#800) Tech Debt: Fix Cypress Tests (#800) * BHBC-1837: Fix survey attachment metadata endpoint (#801) Bug fix for survey attachment view details * BHBC-1201: Push project/survey metadata (EML) to backbone on project/survey create/update (#803) BHBC-1201: Push project/survey metadata (EML) to backbone on create/update * BHBC-1841: Remove Project/Survey Publish Buttons And Related Code (#804) - Project and survey UI no longer include publish button - API no longer has endpoints for publishing * BHBC-1868: Push Observation Data to BioHub (#805) System admin button + endpoint to submit project and survey EML + Observation data to BioHub Backbone. * BHBC-1868-2: Handle error popup for BioHub Submit, remove some old logs, enable biohub submission env var for dev. (#806) - Handle error popup for BioHub Submit - remove some old logs - enable biohub submission env var for dev * TechDebt: Update Keycloak config - add pkce method (#807) - Update keycloak config to include pkce option * TechDebt: Port latest version of DataLoader hook (and related hooks/tests) to SIMS (#809) * TechDebt: Update Template apiVersion from "v1" to "template.openshift.io/v1" (#810) * BHBC-1893/1880: Update the Composition and SRB Survey Template (#808) * BHBC-1867: Cant delete a system user that has no system role (#811) - Fix issue that prevented deleting system users that had no system role. - Fix bug that was displaying non-human users in the manage users list. * Update Sims Template Validations (#812) * BHBC-1914, 1918, 1920 (#816) Updated validation for summary templates * BHBC-1923: Update Resource Page (#814) * BHBC-1912: Remove the Table Preview for Submitted Observations and Summary Results (#815) * edits for moose srb and comp validation * add transect validation * add sheep pop comp validation survey (broken) * sheep validation functioning * goat validation functioning * fix edits for validations * trigger build * initial commit * remove Observation and Summary CSV table and ref * trigger build * fix merge conflict * more merge conflicts Co-authored-by: Anissa Agahchen <[email protected]> * BHBC-1922: Add Attachments Datra To EML (#817) * Include attachments metadata in EML - adjusted EML pub date to short ISO format - adjusted order of EML to conform with specification - adjusted database smoke test script for usage as initial data population. while application now does not throw error, issues persist and have been documented in Jira * added new elk summary template to resource page (#818) Added Elk Summary Template to Resource Page * BHBC-1930, 1931, 1932 (#820)- Elk Templates and summary results * BHBC-1547: Create Project Improvements (#819) Refactor create project page to a single form, removing the multi-step wizard * BHBC-1925: Move Permits to Survey (#813) - Adjusted permit model for model 1.2 - Adjusted db function project deletion routines - Added smoke test file - Purge old permit code from all project related components (frontend and backend) - Add CustomFieldArray Component - Move permit components/logic to Survey (from Project) * BHBC-1966: Add 2 new items to the agency codes list (#825) Add 2 new items to the agency codes list Co-authored-by: Curtis Upshall <[email protected]> Co-authored-by: Roland Stens <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Anissa Agahchen <[email protected]> Co-authored-by: Kjartan <[email protected]> Co-authored-by: AlfredRosenthal <[email protected]> Co-authored-by: Charlie Garrett-Jones <[email protected]> * Clean-up / Refactor Project Details and Related Components * Update Project List Page / Remove Unused Functionality from Attachments List * Standardize Title Container Structure and Styling * Cleanup Title Container Alignment and Spacing * Resource Page Clean-up * Resource Page Clean-up * Manage Users Page Clean-up * Users Interface Clean-up * dialog setup * Formatting Updates * Project Details and Component Clean-up * Edit Page functioning errors still present * UI Layout Updates * UI Cleanup * Clean-up Front-end for Edit Project Page * UI Updates for Create / Edit Project UI's * fix iucn and funding edits * Project Detail Component Clean-up * UI Clean-up * Fix one line * fix save and cancel buttons * Spacing clean-up * Test rework more work to be done * Test to Dev (#850) Prepping dev for test release * User Details Page Cleanup * Fix Naming Conventions * Finish fix all broken tests Co-authored-by: Nick Phura <[email protected]> Co-authored-by: Curtis Upshall <[email protected]> Co-authored-by: Roland Stens <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Anissa Agahchen <[email protected]> Co-authored-by: AlfredRosenthal <[email protected]> Co-authored-by: Charlie Garrett-Jones <[email protected]> Co-authored-by: jeznorth <[email protected]> Co-authored-by: AlfredRosenthal <[email protected]> * Revert "BHBC-2058: Edit Project as a Single Page / General UI Clean-up (#856)" (#857) This reverts commit 5c1cd58. * BHBC-1097: Use attachment-service for getProjectAttachments and getProjectReportAttachments * BHBC-1097: implement project attachment get methods in service and repo files * BHBC-1097: Update project attachments list endpoint to use service methods * BHBC-1097: Sepearate project attachments and report attachments * BHBC-1097: Attachment repo and service typedef refactor * BHBC-1097: Show status for project attachment * BHBC-1097: Report status implemented for projects * BHBC-1097: Run make fix * BHBC-1097: Remove commented code * BHBC-1097: Separate chip into its own component file * - rectified missing artifact ids in security association unique keys Co-authored-by: Kjartan <[email protected]> Co-authored-by: Nick Phura <[email protected]> Co-authored-by: Roland Stens <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Anissa Agahchen <[email protected]> Co-authored-by: AlfredRosenthal <[email protected]> Co-authored-by: Charlie Garrett-Jones <[email protected]> Co-authored-by: jeznorth <[email protected]> Co-authored-by: AlfredRosenthal <[email protected]> Co-authored-by: cgarrettjones <[email protected]>
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Overview
Links to Jira tickets
https://quartech.atlassian.net/browse/BHBC-1736
Description of relevant changes
Tightens qualification for string truncating in the
ReadMoreFieldcomponent to avoid an issue where pressing Read More/Read Less results in no change.