BHBC-1950/BHBC-1951: Import/Validate Deer Survey Templates #832
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## dev #832 +/- ##
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Coverage 70.78% 70.78%
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Files 333 333
Lines 11490 11490
Branches 2071 2071
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Partials 440 440
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NickPhura
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Nov 17, 2022
* Fix/Enhancement: Port improved user access request functionality from Restoration, Adjust access request approval to account for existing bceid-basic-business identity sources (#771) - Port improved user access request functionality from Restoration - Better/fixed handling for approving/denying user requests - Adjust access request approval to account for existing bceid-basic-business identity sources - Existing access requests created before we accounted for bceid-basic-and-business identity sources should no longer throw an error when trying to approve/deny them. * BHBC-1730: Use centerOfMass instead of centroid for project area center (#770) * BHBC-1730: Use centerOfMass instead of centroid for project area center point. * BHBC-1736: Fix Read More/Read Less idempotence bug (#772) * BHBC-1736: Tighten qualification for string truncating * BHBC-1736: Fix null coalesce * BHBC-1736: Change variable name to be more descriptive * Bugfix: Incorrect identity source enum (#776) - account for the fact that openapi enums are case sensitive * Create toDraft.yml (#779) * Create toDraft.yml * remove dependency * Bump sqlite3 from 5.0.2 to 5.0.8 in /n8n (#773) Bumps [sqlite3](https://github.com/TryGhost/node-sqlite3) from 5.0.2 to 5.0.8. - [Release notes](https://github.com/TryGhost/node-sqlite3/releases) - [Changelog](https://github.com/TryGhost/node-sqlite3/blob/master/CHANGELOG.md) - [Commits](TryGhost/node-sqlite3@v5.0.2...v5.0.8) --- updated-dependencies: - dependency-name: sqlite3 dependency-type: indirect ... Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Nick Phura <[email protected]> * Fixed horizontal autoscaler and consolidate deployment files (#781) * Fixed horizontal autoscaler and consolidate deployment files * Some config changes * Forgot one * fix * Set utilization as portion of reques, not maximum * BHBC-1778: Make resources page publicly viewable (#783) * BHBC-1776: Update docker-compose and related env vars (#782) * BHBC-1759: Fix cypress tests (#784) - Fix cypress tests - Update n8n version/config * BHBC-1755: Add backbone api env var and platform-service. (#780) * BHBC-1755: Add backbone api env var and platform-service. - Remove clamav hardcoded default values - Improve checking for required clamav env vars before initializing scanner - Add missing clamav env vars to api deployment yaml * Node upgrade as Cypress needs a newer version of node (#785) * Bump convict from 6.2.2 to 6.2.3 in /n8n (#786) Bumps [convict](https://github.com/mozilla/node-convict) from 6.2.2 to 6.2.3. - [Release notes](https://github.com/mozilla/node-convict/releases) - [Changelog](https://github.com/mozilla/node-convict/blob/master/CHANGELOG.md) - [Commits](mozilla/node-convict@v6.2.2...v6.2.3) --- updated-dependencies: - dependency-name: convict dependency-type: indirect ... Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * Updates the HPAs for APP and API (#790) * BHBC-1783: Error When Editing Purpose and Methodology (#787) Fixed an error that occurred when attempting to edit the ‘Purpose and Methodology’ section of a survey. - Updated schema validation for GET on purpose_methodology update endpoint. - BHBC-1783: Add API response validation testing to update endpoint (work in progress). - BHBC-1783: Amend platform-service and its test file w 'dwc/submission/create' endpoint. * BHBC-1775, BHBC-1809: Templates in prod are still downloaded from S3 Dev (#793) - Replace hardcoded URLs in Resources page by implementing env. vars (BHBC-1775) - Fix API response validation bugs for Project Drafts (BHBC-1809) * BHBC-1796-1810 : bug fix - xlsx observation upload not completing (#792) BHBC-1796: Bug fix - Observation points not displaying on map BHBC-1810: Bug fix - Transformation of large template file crashes API in Openshift * fix display of occurrences on full-screen view (#794) * BHBC-1789: EML Updates + Survey Service (#766) Tech debt: survey-service EML: major updates to EML creation code * BUGFIX: Strip null values from vantage code array in SQL response * Tech Debt: Fix Cypress Tests (#800) Tech Debt: Fix Cypress Tests (#800) * BHBC-1837: Fix survey attachment metadata endpoint (#801) Bug fix for survey attachment view details * BHBC-1201: Push project/survey metadata (EML) to backbone on project/survey create/update (#803) BHBC-1201: Push project/survey metadata (EML) to backbone on create/update * BHBC-1841: Remove Project/Survey Publish Buttons And Related Code (#804) - Project and survey UI no longer include publish button - API no longer has endpoints for publishing * BHBC-1868: Push Observation Data to BioHub (#805) System admin button + endpoint to submit project and survey EML + Observation data to BioHub Backbone. * BHBC-1868-2: Handle error popup for BioHub Submit, remove some old logs, enable biohub submission env var for dev. (#806) - Handle error popup for BioHub Submit - remove some old logs - enable biohub submission env var for dev * TechDebt: Update Keycloak config - add pkce method (#807) - Update keycloak config to include pkce option * TechDebt: Port latest version of DataLoader hook (and related hooks/tests) to SIMS (#809) * TechDebt: Update Template apiVersion from "v1" to "template.openshift.io/v1" (#810) * BHBC-1893/1880: Update the Composition and SRB Survey Template (#808) * BHBC-1867: Cant delete a system user that has no system role (#811) - Fix issue that prevented deleting system users that had no system role. - Fix bug that was displaying non-human users in the manage users list. * Update Sims Template Validations (#812) * BHBC-1914, 1918, 1920 (#816) Updated validation for summary templates * BHBC-1923: Update Resource Page (#814) * BHBC-1912: Remove the Table Preview for Submitted Observations and Summary Results (#815) * edits for moose srb and comp validation * add transect validation * add sheep pop comp validation survey (broken) * sheep validation functioning * goat validation functioning * fix edits for validations * trigger build * initial commit * remove Observation and Summary CSV table and ref * trigger build * fix merge conflict * more merge conflicts Co-authored-by: Anissa Agahchen <[email protected]> * BHBC-1922: Add Attachments Datra To EML (#817) * Include attachments metadata in EML - adjusted EML pub date to short ISO format - adjusted order of EML to conform with specification - adjusted database smoke test script for usage as initial data population. while application now does not throw error, issues persist and have been documented in Jira * added new elk summary template to resource page (#818) Added Elk Summary Template to Resource Page * BHBC-1930, 1931, 1932 (#820)- Elk Templates and summary results * BHBC-1547: Create Project Improvements (#819) Refactor create project page to a single form, removing the multi-step wizard * BHBC-1925: Move Permits to Survey (#813) - Adjusted permit model for model 1.2 - Adjusted db function project deletion routines - Added smoke test file - Purge old permit code from all project related components (frontend and backend) - Add CustomFieldArray Component - Move permit components/logic to Survey (from Project) * BHBC-1966: Add 2 new items to the agency codes list (#825) Add 2 new items to the agency codes list * BHBC-1925: added permit servce test coverage (#824) * BHBC-1904 (#822) Removed all public views/ pages and supporting tests/ SQL. All unauthenticated users will now be directed to the login page * BHBC-1949: Email notification to Users that access has been granted or denied * BHBC-1950/BHBC-1951: Import/Validate Deer Survey Templates (#832) * BHBC-1965: modifications to occurrence and summary details data model (#830) - addition of species descriptor to survey occurrence templates - addition of templates concept to survey summary details - adjusted file name Co-authored-by: Kjartan <[email protected]> * email link functioning (#833) * BHBC-1937 - Enhance MapContainer with changes from BioHub (#827) BHBC-1937: Ported MapContainer improvements over from platform: * Created new React components to encapsulate Map components and `wfs-utils` helper for rendering and selecting regional/mu layers * Updated tests and added type defs for map util functions. * BHBC-1962-1963-1982-1975: Validation refactoring and error handling (#828) * BHBC-1978: Data Administrator Permissions Are Incorrect (#838) * BHBC-1972: Delete a Draft Project (#837) * BHBC-1998, BHBC-1999 (#839) Refactored Darwin core submission endpoint, added column to track Darwin core data as JSON Co-authored-by: Anissa Agahchen <[email protected]> * BHBC:1992: bugfix - keycloak env not passed to api (#840) Fixed keycloak envs so they are passed properly to API * updated file name (#841) Renamed migration to maintain standards * BHBC-1979: Update Templates to Use New Identifiers (#835) * BHBC 2009 (#836) Added wrapped function to catch any errors thrown by database functions * BHBC-2018 (#843) Addition of security review timestamp attribute for all documents * BHBC-2052 (#847) Fixed keycloak URL for SIMS/ BioHub intake * PR fix (#844) * BHBC-1976: Update API to utilize new DB changes for processing summary result templates (#834) * BHBC-1976: Enhance summary template validation to get validation schema from database. * Created a service and repository file for summary template validation. * Determine validation schema by performing search on template name, version and taxonomic code. * Read in template name and version from XLSX custom properties. Co-authored-by: Curtis Upshall <[email protected]> Co-authored-by: Roland Stens <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Anissa Agahchen <[email protected]> Co-authored-by: Kjartan <[email protected]> Co-authored-by: AlfredRosenthal <[email protected]> Co-authored-by: Charlie Garrett-Jones <[email protected]>
NickPhura
added a commit
that referenced
this pull request
Nov 17, 2022
* Fix/Enhancement: Port improved user access request functionality from Restoration, Adjust access request approval to account for existing bceid-basic-business identity sources (#771) - Port improved user access request functionality from Restoration - Better/fixed handling for approving/denying user requests - Adjust access request approval to account for existing bceid-basic-business identity sources - Existing access requests created before we accounted for bceid-basic-and-business identity sources should no longer throw an error when trying to approve/deny them. * BHBC-1730: Use centerOfMass instead of centroid for project area center (#770) * BHBC-1730: Use centerOfMass instead of centroid for project area center point. * BHBC-1736: Fix Read More/Read Less idempotence bug (#772) * BHBC-1736: Tighten qualification for string truncating * BHBC-1736: Fix null coalesce * BHBC-1736: Change variable name to be more descriptive * Bugfix: Incorrect identity source enum (#776) - account for the fact that openapi enums are case sensitive * Create toDraft.yml (#779) * Create toDraft.yml * remove dependency * Bump sqlite3 from 5.0.2 to 5.0.8 in /n8n (#773) Bumps [sqlite3](https://github.com/TryGhost/node-sqlite3) from 5.0.2 to 5.0.8. - [Release notes](https://github.com/TryGhost/node-sqlite3/releases) - [Changelog](https://github.com/TryGhost/node-sqlite3/blob/master/CHANGELOG.md) - [Commits](TryGhost/node-sqlite3@v5.0.2...v5.0.8) --- updated-dependencies: - dependency-name: sqlite3 dependency-type: indirect ... Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Nick Phura <[email protected]> * Fixed horizontal autoscaler and consolidate deployment files (#781) * Fixed horizontal autoscaler and consolidate deployment files * Some config changes * Forgot one * fix * Set utilization as portion of reques, not maximum * BHBC-1778: Make resources page publicly viewable (#783) * BHBC-1776: Update docker-compose and related env vars (#782) * BHBC-1759: Fix cypress tests (#784) - Fix cypress tests - Update n8n version/config * BHBC-1755: Add backbone api env var and platform-service. (#780) * BHBC-1755: Add backbone api env var and platform-service. - Remove clamav hardcoded default values - Improve checking for required clamav env vars before initializing scanner - Add missing clamav env vars to api deployment yaml * Node upgrade as Cypress needs a newer version of node (#785) * Bump convict from 6.2.2 to 6.2.3 in /n8n (#786) Bumps [convict](https://github.com/mozilla/node-convict) from 6.2.2 to 6.2.3. - [Release notes](https://github.com/mozilla/node-convict/releases) - [Changelog](https://github.com/mozilla/node-convict/blob/master/CHANGELOG.md) - [Commits](mozilla/node-convict@v6.2.2...v6.2.3) --- updated-dependencies: - dependency-name: convict dependency-type: indirect ... Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * Updates the HPAs for APP and API (#790) * BHBC-1783: Error When Editing Purpose and Methodology (#787) Fixed an error that occurred when attempting to edit the ‘Purpose and Methodology’ section of a survey. - Updated schema validation for GET on purpose_methodology update endpoint. - BHBC-1783: Add API response validation testing to update endpoint (work in progress). - BHBC-1783: Amend platform-service and its test file w 'dwc/submission/create' endpoint. * BHBC-1775, BHBC-1809: Templates in prod are still downloaded from S3 Dev (#793) - Replace hardcoded URLs in Resources page by implementing env. vars (BHBC-1775) - Fix API response validation bugs for Project Drafts (BHBC-1809) * BHBC-1796-1810 : bug fix - xlsx observation upload not completing (#792) BHBC-1796: Bug fix - Observation points not displaying on map BHBC-1810: Bug fix - Transformation of large template file crashes API in Openshift * fix display of occurrences on full-screen view (#794) * BHBC-1789: EML Updates + Survey Service (#766) Tech debt: survey-service EML: major updates to EML creation code * BUGFIX: Strip null values from vantage code array in SQL response * Tech Debt: Fix Cypress Tests (#800) Tech Debt: Fix Cypress Tests (#800) * BHBC-1837: Fix survey attachment metadata endpoint (#801) Bug fix for survey attachment view details * BHBC-1201: Push project/survey metadata (EML) to backbone on project/survey create/update (#803) BHBC-1201: Push project/survey metadata (EML) to backbone on create/update * BHBC-1841: Remove Project/Survey Publish Buttons And Related Code (#804) - Project and survey UI no longer include publish button - API no longer has endpoints for publishing * BHBC-1868: Push Observation Data to BioHub (#805) System admin button + endpoint to submit project and survey EML + Observation data to BioHub Backbone. * BHBC-1868-2: Handle error popup for BioHub Submit, remove some old logs, enable biohub submission env var for dev. (#806) - Handle error popup for BioHub Submit - remove some old logs - enable biohub submission env var for dev * TechDebt: Update Keycloak config - add pkce method (#807) - Update keycloak config to include pkce option * TechDebt: Port latest version of DataLoader hook (and related hooks/tests) to SIMS (#809) * TechDebt: Update Template apiVersion from "v1" to "template.openshift.io/v1" (#810) * BHBC-1893/1880: Update the Composition and SRB Survey Template (#808) * BHBC-1867: Cant delete a system user that has no system role (#811) - Fix issue that prevented deleting system users that had no system role. - Fix bug that was displaying non-human users in the manage users list. * Update Sims Template Validations (#812) * BHBC-1914, 1918, 1920 (#816) Updated validation for summary templates * BHBC-1923: Update Resource Page (#814) * BHBC-1912: Remove the Table Preview for Submitted Observations and Summary Results (#815) * edits for moose srb and comp validation * add transect validation * add sheep pop comp validation survey (broken) * sheep validation functioning * goat validation functioning * fix edits for validations * trigger build * initial commit * remove Observation and Summary CSV table and ref * trigger build * fix merge conflict * more merge conflicts Co-authored-by: Anissa Agahchen <[email protected]> * BHBC-1922: Add Attachments Datra To EML (#817) * Include attachments metadata in EML - adjusted EML pub date to short ISO format - adjusted order of EML to conform with specification - adjusted database smoke test script for usage as initial data population. while application now does not throw error, issues persist and have been documented in Jira * added new elk summary template to resource page (#818) Added Elk Summary Template to Resource Page * BHBC-1930, 1931, 1932 (#820)- Elk Templates and summary results * BHBC-1547: Create Project Improvements (#819) Refactor create project page to a single form, removing the multi-step wizard * BHBC-1925: Move Permits to Survey (#813) - Adjusted permit model for model 1.2 - Adjusted db function project deletion routines - Added smoke test file - Purge old permit code from all project related components (frontend and backend) - Add CustomFieldArray Component - Move permit components/logic to Survey (from Project) * BHBC-1966: Add 2 new items to the agency codes list (#825) Add 2 new items to the agency codes list * BHBC-1925: added permit servce test coverage (#824) * BHBC-1904 (#822) Removed all public views/ pages and supporting tests/ SQL. All unauthenticated users will now be directed to the login page * BHBC-1949: Email notification to Users that access has been granted or denied * BHBC-1950/BHBC-1951: Import/Validate Deer Survey Templates (#832) * BHBC-1965: modifications to occurrence and summary details data model (#830) - addition of species descriptor to survey occurrence templates - addition of templates concept to survey summary details - adjusted file name Co-authored-by: Kjartan <[email protected]> * email link functioning (#833) * BHBC-1937 - Enhance MapContainer with changes from BioHub (#827) BHBC-1937: Ported MapContainer improvements over from platform: * Created new React components to encapsulate Map components and `wfs-utils` helper for rendering and selecting regional/mu layers * Updated tests and added type defs for map util functions. * BHBC-1962-1963-1982-1975: Validation refactoring and error handling (#828) * BHBC-1978: Data Administrator Permissions Are Incorrect (#838) * BHBC-1972: Delete a Draft Project (#837) * BHBC-1998, BHBC-1999 (#839) Refactored Darwin core submission endpoint, added column to track Darwin core data as JSON Co-authored-by: Anissa Agahchen <[email protected]> * BHBC:1992: bugfix - keycloak env not passed to api (#840) Fixed keycloak envs so they are passed properly to API * updated file name (#841) Renamed migration to maintain standards * BHBC-1979: Update Templates to Use New Identifiers (#835) * BHBC 2009 (#836) Added wrapped function to catch any errors thrown by database functions * BHBC-2018 (#843) Addition of security review timestamp attribute for all documents * BHBC-2052 (#847) Fixed keycloak URL for SIMS/ BioHub intake * PR fix (#844) * BHBC-1976: Update API to utilize new DB changes for processing summary result templates (#834) * BHBC-1976: Enhance summary template validation to get validation schema from database. * Created a service and repository file for summary template validation. * Determine validation schema by performing search on template name, version and taxonomic code. * Read in template name and version from XLSX custom properties. * commit empty 2 * commit empty 3 * commit empty 4 * change readme * change readme 2 Co-authored-by: Curtis Upshall <[email protected]> Co-authored-by: Roland Stens <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Anissa Agahchen <[email protected]> Co-authored-by: Kjartan <[email protected]> Co-authored-by: AlfredRosenthal <[email protected]> Co-authored-by: Charlie Garrett-Jones <[email protected]>
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