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bioinformatics-group

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  1. TranCEP TranCEP Public

    A tool to predict the substrate class of a given transporter

    R 5 4

  2. TooT-SC TooT-SC Public

    R 2 3

  3. bioinformatics-singularity bioinformatics-singularity Public

    The software we use to run things in our lab

    Singularity 1 2

  4. TooT-T TooT-T Public

    Tool to predict transporter proteins.

    R 1 2

  5. TooT-M TooT-M Public

    Integrative approach for detecting membrane proteins

    R 1 1

  6. TooT-Proteome TooT-Proteome Public

    A tool to combine Toot-T and Toot-SC to more quickly classify transporter proteins

    Python 1 2

Repositories

Showing 10 of 24 repositories
  • TooT-BERT_ICAT Public Forked from simaataei/TooT-BERT_ICAT

    TooT-BERT-ICAT utilizes ProtBERT-BFD to predict and classify inorganic ion-specific transmembrane transporter proteins with high precision and accuracy.

    bioinformatics-group/TooT-BERT_ICAT’s past year of commit activity
    Python 0 1 0 0 Updated Mar 27, 2024
  • tootsuite-website Public

    The public website for the tootsuite project

    bioinformatics-group/tootsuite-website’s past year of commit activity
    HTML 0 MIT 1 4 0 Updated Oct 31, 2023
  • TooT-BERT-T Public Forked from ghazikhanihamed/TooT-BERT-T

    Transmembrane Transport Protein Predictor Using ProtBERT-BFD and Logistic Regression

    bioinformatics-group/TooT-BERT-T’s past year of commit activity
    Python 0 MIT 2 0 1 Updated Aug 3, 2023
  • TooT-BERT-SC Public Forked from simaataei/TooT-BERT-SC

    Classifies transmembrane transporter proteins by substrate using a majority-vote approach with various standard predictors

    bioinformatics-group/TooT-BERT-SC’s past year of commit activity
    Python 0 1 0 0 Updated Jun 1, 2023
  • TooT-Proteome Public

    A tool to combine Toot-T and Toot-SC to more quickly classify transporter proteins

    bioinformatics-group/TooT-Proteome’s past year of commit activity
    Python 1 MIT 2 1 0 Updated Apr 5, 2023
  • toot_bert_m Public Forked from ghazikhanihamed/toot_bert_m

    Discriminating membrane proteins from non-membrane proteins using a BERT representation of protein primary sequences

    bioinformatics-group/toot_bert_m’s past year of commit activity
    Python 0 MIT 1 0 0 Updated Apr 4, 2023
  • TooT-BERT-Proteome Public

    Predicts transmembrane transporter proteins and their substrate-specific properties using BERT-based predictors for transporter and substrate classification

    bioinformatics-group/TooT-BERT-Proteome’s past year of commit activity
    0 MIT 0 0 0 Updated Mar 31, 2023
  • bioinformatics-singularity Public

    The software we use to run things in our lab

    bioinformatics-group/bioinformatics-singularity’s past year of commit activity
    Singularity 1 MIT 2 9 0 Updated May 6, 2022
  • TooT-SC Public
    bioinformatics-group/TooT-SC’s past year of commit activity
    R 2 MIT 3 3 0 Updated May 4, 2022
  • TooT-T Public

    Tool to predict transporter proteins.

    bioinformatics-group/TooT-T’s past year of commit activity
    R 1 MIT 2 5 0 Updated May 4, 2022
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