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With the deprecation of
MMTF
(#525), this PR implementsBinaryCIF
as the new standard binary structure file format for Biotite.biotite.structure.io.pdbx.BinaryCIFFile
biotite.structure.io.pdbx.CIFFile
, deprecatingbiotite.structure.io.pdbx.PDBxFile
biotite.structure.pdbx
to handle the new file interfacesbcif
download inbiotite.database.rcsb.fetch()
biotite.structure.io.mmtf
mmtf
usage withbcif
in tests and documentationCloses #525.