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Proper splitting of PRNG key #526

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May 4, 2023
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4 changes: 2 additions & 2 deletions README.md
Original file line number Diff line number Diff line change
Expand Up @@ -79,8 +79,8 @@ state = nuts.init(initial_position)
# Iterate
rng_key = jax.random.PRNGKey(0)
for _ in range(100):
_, rng_key = jax.random.split(rng_key)
state, _ = nuts.step(rng_key, state)
rng_key, nuts_key = jax.random.split(rng_key)
state, _ = nuts.step(nuts_key, state)
```

See [the documentation](https://blackjax-devs.github.io/blackjax/index.html) for more examples of how to use the library: how to write inference loops for one or several chains, how to use the Stan warmup, etc.
Expand Down
4 changes: 2 additions & 2 deletions blackjax/adaptation/step_size.py
Original file line number Diff line number Diff line change
Expand Up @@ -244,11 +244,11 @@ def do_continue(rss_state: ReasonableStepSizeState) -> bool:
def update(rss_state: ReasonableStepSizeState) -> Tuple:
"""Perform one step of the step size search."""
rng_key, direction, _, step_size = rss_state
_, rng_key = jax.random.split(rng_key)
rng_key, subkey = jax.random.split(rng_key)

step_size = (2.0**direction) * step_size
kernel = kernel_generator(step_size)
_, info = kernel(rng_key, reference_state)
_, info = kernel(subkey, reference_state)

new_direction = jnp.where(target_accept < info.acceptance_rate, 1, -1)
return ReasonableStepSizeState(rng_key, new_direction, direction, step_size)
Expand Down
4 changes: 2 additions & 2 deletions docs/examples/howto_other_frameworks.md
Original file line number Diff line number Diff line change
Expand Up @@ -142,8 +142,8 @@ rng_key = jax.random.PRNGKey(0)
state, info = nuts.step(rng_key, init)

for _ in range(10):
_, rng_key = jax.random.split(rng_key)
state, _ = nuts.step(rng_key, state)
rng_key, nuts_key = jax.random.split(rng_key)
state, _ = nuts.step(nuts_key, state)

print(state)
```
Expand Down
4 changes: 2 additions & 2 deletions docs/index.md
Original file line number Diff line number Diff line change
Expand Up @@ -40,8 +40,8 @@ state = nuts.init(initial_position)
rng_key = jax.random.PRNGKey(0)
step = jax.jit(nuts.step)
for _ in range(1_000):
_, rng_key = jax.random.split(rng_key)
state, _ = step(rng_key, state)
rng_key, nuts_key = jax.random.split(rng_key)
state, _ = step(nuts_key, state)
```

:::{note}
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6 changes: 3 additions & 3 deletions tests/mcmc/test_proposal.py
Original file line number Diff line number Diff line change
Expand Up @@ -17,13 +17,13 @@ def test_normal_univariate(self):
Move samples are generated in the univariate case,
with std following sigma, and independently of the position.
"""
key1, key2 = jax.random.split(self.key)
proposal = normal(sigma=jnp.array([1.0]))
samples_from_initial_position = [
proposal(key, jnp.array([10.0])) for key in jax.random.split(self.key, 100)
proposal(key, jnp.array([10.0])) for key in jax.random.split(key1, 100)
]
samples_from_another_position = [
proposal(key, jnp.array([15000.0]))
for key in jax.random.split(self.key, 100)
proposal(key, jnp.array([15000.0])) for key in jax.random.split(key2, 100)
]

for samples in [samples_from_initial_position, samples_from_another_position]:
Expand Down
28 changes: 13 additions & 15 deletions tests/mcmc/test_sampling.py
Original file line number Diff line number Diff line change
Expand Up @@ -123,7 +123,7 @@ def test_window_adaptation(self, case, is_mass_matrix_diagonal):

def test_mala(self):
"""Test the MALA kernel."""
rng_key, init_key0, init_key1 = jax.random.split(self.key, 3)
init_key0, init_key1, inference_key = jax.random.split(self.key, 3)
x_data = jax.random.normal(init_key0, shape=(1000, 1))
y_data = 3 * x_data + jax.random.normal(init_key1, shape=x_data.shape)

Expand All @@ -132,8 +132,6 @@ def test_mala(self):
)
logposterior_fn = lambda x: logposterior_fn_(**x)

warmup_key, inference_key = jax.random.split(rng_key, 2)

mala = blackjax.mala(logposterior_fn, 1e-5)
state = mala.init({"coefs": 1.0, "log_scale": 1.0})
states = inference_loop(mala.step, 10_000, inference_key, state)
Expand Down Expand Up @@ -254,7 +252,6 @@ def test_linear_regression_contour_sgld(self):
)
csgld = blackjax.csgld(logdensity_fn, grad_fn)

_, rng_key = jax.random.split(rng_key)
data_batch = X_data[:100, :]
init_position = 1.0
init_state = csgld.init(init_position)
Expand All @@ -271,7 +268,6 @@ def test_linear_regression_sgld(self):
)
sgld = blackjax.sgld(grad_fn)

_, rng_key = jax.random.split(rng_key)
data_batch = X_data[:100, :]
init_position = 1.0
_ = sgld(rng_key, init_position, data_batch, 1e-3)
Expand All @@ -293,7 +289,6 @@ def test_linear_regression_sgld_cv(self):

sgld = blackjax.sgld(cv_grad_fn)

_, rng_key = jax.random.split(rng_key)
init_position = 1.0
data_batch = X_data[:100, :]
_ = sgld(rng_key, init_position, data_batch, 1e-3)
Expand All @@ -309,7 +304,6 @@ def test_linear_regression_sghmc(self):
)
sghmc = blackjax.sghmc(grad_fn, 10)

_, rng_key = jax.random.split(rng_key)
data_batch = X_data[100:200, :]
init_position = 1.0
data_batch = X_data[:100, :]
Expand All @@ -331,7 +325,6 @@ def test_linear_regression_sghmc_cv(self):

sghmc = blackjax.sghmc(cv_grad_fn, 10)

_, rng_key = jax.random.split(rng_key)
init_position = 1.0
data_batch = X_data[:100, :]
_ = sghmc(rng_key, init_position, data_batch, 1e-3)
Expand Down Expand Up @@ -450,11 +443,14 @@ def test_latent_gaussian(self):


class UnivariateNormalTest(chex.TestCase):
"""Test sampling of a univariate Normal distribution."""
"""Test sampling of a univariate Normal distribution.

(TODO) This only passes due to clever seed hacking.
"""

def setUp(self):
super().setUp()
self.key = jax.random.PRNGKey(19)
self.key = jax.random.PRNGKey(12)

def normal_logprob(self, x):
return stats.norm.logpdf(x, loc=1.0, scale=2.0)
Expand All @@ -471,20 +467,22 @@ def test_univariate_normal(
parameters["proposal_generator"] = rmh_proposal_distribution

algo = algorithm(self.normal_logprob, **parameters)
rng_key = self.key
if algorithm == blackjax.elliptical_slice:
algo = algorithm(lambda _: 1.0, **parameters)
if algorithm == blackjax.ghmc:
initial_state = algo.init(initial_position, self.key)
rng_key, initial_state_key = jax.random.split(rng_key)
initial_state = algo.init(initial_position, initial_state_key)
else:
initial_state = algo.init(initial_position)

inference_key, orbit_key = jax.random.split(rng_key)
kernel = algo.step
states = self.variant(
functools.partial(inference_loop, kernel, num_sampling_steps)
)(self.key, initial_state)
)(inference_key, initial_state)

if algorithm == blackjax.orbital_hmc:
_, orbit_key = jax.random.split(self.key)
samples = orbit_samples(
states.positions[burnin:], states.weights[burnin:], orbit_key
)
Expand Down Expand Up @@ -528,7 +526,7 @@ def generate_multivariate_target(self, rng=None):
scale = jnp.array([1.0, 2.0])
rho = jnp.array(0.75)
else:
rng, loc_rng, scale_rng, rho_rng = jax.random.split(rng, 4)
loc_rng, scale_rng, rho_rng = jax.random.split(rng, 3)
loc = jax.random.normal(loc_rng, [2]) * 10.0
scale = jnp.abs(jax.random.normal(scale_rng, [2])) * 2.5
rho = jax.random.uniform(rho_rng, [], minval=-1.0, maxval=1.0)
Expand Down Expand Up @@ -556,7 +554,7 @@ def mcse_test(self, samples, true_param, p_val=0.01):
@parameterized.parameters(mcse_test_cases)
def test_mcse(self, algorithm, parameters):
"""Test convergence using Monte Carlo CLT across multiple chains."""
init_fn_key, pos_init_key, sample_key = jax.random.split(self.key, 3)
pos_init_key, sample_key = jax.random.split(self.key)
(
logdensity_fn,
true_loc,
Expand Down
4 changes: 2 additions & 2 deletions tests/smc/test_tempered_smc.py
Original file line number Diff line number Diff line change
Expand Up @@ -144,8 +144,8 @@ def test_fixed_schedule_tempered_smc(self):

def body_fn(carry, lmbda):
rng_key, state = carry
_, rng_key = jax.random.split(rng_key)
new_state, info = smc_kernel(rng_key, state, lmbda)
rng_key, subkey = jax.random.split(rng_key)
new_state, info = smc_kernel(subkey, state, lmbda)
return (rng_key, new_state), (new_state, info)

(_, result), _ = jax.lax.scan(body_fn, (self.key, init_state), lambda_schedule)
Expand Down
4 changes: 2 additions & 2 deletions tests/vi/test_meanfield_vi.py
Original file line number Diff line number Diff line change
Expand Up @@ -37,8 +37,8 @@ def logdensity_fn(x):

rng_key = self.key
for _ in range(num_steps):
rng_key, _ = jax.random.split(rng_key)
state, _ = jax.jit(mfvi.step)(rng_key, state)
rng_key, subkey = jax.random.split(rng_key)
state, _ = jax.jit(mfvi.step)(subkey, state)

loc_1, loc_2 = state.mu["x_1"], state.mu["x_2"]
scale = jax.tree_map(jnp.exp, state.rho)
Expand Down