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Add properties to show selected columns in mutations table on init #9912

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Jan 13, 2023
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Add properties to show selected columns in mutations table on init #9912

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9 changes: 9 additions & 0 deletions docs/deployment/customization/portal.properties-Reference.md
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Expand Up @@ -191,6 +191,15 @@ Namespace columns are custom columns in the MAF file that can be shown in Mutati
skin.mutation_table.namespace_column.show_by_default=
```

### Default visible columns on init in Mutations Table

Define the columns that are going to be visible in the Mutation Table on the Patient View and the Results View. If namespace columns are set to visible by default, they will also be shown.

```
# skin.patient_view.mutation_table.columns.show_on_init=
# skin.results_view.mutation_table.columns.show_on_init=
```

### Hide p- and q-values in survival types table

```
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2 changes: 2 additions & 0 deletions portal/src/main/webapp/config_service.jsp
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Expand Up @@ -139,6 +139,8 @@
"skin.geneset_hierarchy.default_gsva_score",
"skin.geneset_hierarchy.collapse_by_default",
"skin.mutation_table.namespace_column.show_by_default",
"skin.patient_view.mutation_table.columns.show_on_init",
"skin.results_view.mutation_table.columns.show_on_init",
"comparison.categorical_na_values",
"skin.hide_download_controls"
};
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4 changes: 4 additions & 0 deletions src/main/resources/portal.properties.EXAMPLE
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Expand Up @@ -93,6 +93,10 @@ skin.study_view.link_text=To build your own case set, try out our enhanced Study
# controls whether namespace columns of the MAF file are immediately visible in mutation tables (default is 'false')
# skin.mutation_table.namespace_column.show_by_default=true

# controls which columns from the mutation tables are immediately visible in mutation tables
# skin.patient_view.mutation_table.columns.show_on_init=Gene,Protein Change,Annotation,Mutation Type,Copy #,Cosmic,# Mut in Sample
# skin.results_view.mutation_table.columns.show_on_init=Sample Id,Protein Change,Annotation,Mutation Type,Copy #,Cosmic,# Mut in Sample

# setting controlling the home page
## enable this to show studies for which the user does not have permission (will appear greyed out and cannot be analyzed in study view or results view).
# skin.home_page.show_unauthorized_studies=false
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