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Bigwig average #1169

Merged
merged 10 commits into from
Jan 5, 2023
Merged

Bigwig average #1169

merged 10 commits into from
Jan 5, 2023

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lldelisle
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Welcome to deepTools GitHub repository! Please check the following regarding
your pull request :

  • Does the PR contain new feature?
  • Does the PR contain bugfix?
  • Does the PR contain documentation changes?
  • Does the PR contain changes to the galaxy wrapper?

bigwigAverage is largely inspired from bigwigCompare.

I have not tested with deepBlue so would be great is someone can do it.

@adRn-s adRn-s merged commit 8d9be32 into deeptools:develop Jan 5, 2023
adRn-s added a commit that referenced this pull request Feb 3, 2023
* Fix label options

* add pool

* trigger test

* new azure syntax?

* run also on PR

* fix #1159

* fixes #1172

* Addressing #1181

* Bigwig average (#1169)

* Fixes #1159

* Revert "dendogram of plotCorrelation now matches each cell correctly"

* add bigwigAverage

* linting

* remove forgotten prints

* make bigwigAverage executable

* fix galaxy tests

Co-authored-by: A.s <[email protected]>
Co-authored-by: LeilyR <[email protected]>

* Addresses #1183

* Fix galaxy tests (#1186)

* upload artifact

* allow 1 or 2 lines diff for bowtie2 program

* change github action to get artifacts

* fix plotPCA

* try to fix old samtools installed

* add forgotten channels

---------

Co-authored-by: Cristóbal Gallardo <[email protected]>
Co-authored-by: Björn Grüning <[email protected]>
Co-authored-by: LeilyR <[email protected]>
Co-authored-by: Lucille Delisle <[email protected]>
Co-authored-by: adRn-s <[email protected]>
@lldelisle lldelisle deleted the bigwig_average branch February 6, 2023 08:35
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3 participants