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chore: catch up to suite #1113

Merged
merged 16 commits into from
Mar 1, 2025
Merged

chore: catch up to suite #1113

merged 16 commits into from
Mar 1, 2025

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jiajic
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@jiajic jiajic commented Mar 1, 2025

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jiajic added 16 commits February 5, 2025 10:00
chore: use utility now exported from GiottoUtils
## Bug fixes:
* fix `createGiottoCosMxObject()` not passing `load_expression`, `load_cellmeta`, `load_transcripts` params to `importCosMx()`

## Enhancements
* `poly_pref` param for `createGiottoCosMxObject()` and `importCosMx()` to select between loading the mask images or the `polygons.csv` as polygon info.
* `image_negative_y` param for `createGiottoCosMxObject()` for toggling how images and polygons from mask images should be spatially mapped
* `slide` param made more prominent in `createGiottoCosMxObject()`
* docs
- import utility now supports vectors of filepaths when provided to `load_images()` and `load_polys()`
fix: remove too restrictive filtering on scran results
fix: slide setting passing
@jiajic jiajic merged commit 5514d21 into R4.1.0 Mar 1, 2025
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