Merge pull request #51 from NBISweden/samheader

Pin Bowtie2 to a working version
elsasserlab · Jun 30, 2020 · bd0fba1 · bd0fba1
2 parents a2d3141 + 4c78fde
commit bd0fba1
Showing 1 changed file with 2 additions and 1 deletion.
diff --git a/environment.yml b/environment.yml
@@ -7,7 +7,8 @@ dependencies:
   - snakemake-minimal
   - samtools
   - cutadapt
-  - bowtie2
+  # The package for Bowtie2 2.4.1 creates VN: tag without value in SAM header
+  - bowtie2 =2.3.5.1
   - je-suite
   - igvtools
   - deeptools