v2.3.1

Fixed

• Handling of empty tr_bed parameter (@HudoGriz, #201)
• CNV VCF incorrectly annotated when --annotation false
• Remove comment lines from user supplied BED, to prevent the workflow crashing due to unrecognised columns
• 'implausible alignment information' encountered when workflow re-aligns an already aligned BAM.
• Automated basecaller detection not finding a basecaller model

Changed

• Alignment statistics are now reported for the regions in a BED file, if one is supplied by the user.