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Replace 1.4 for 1.0 in docs. Fixes nf-core#85
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ewels committed Sep 11, 2018
1 parent 5a6f4f2 commit 082d7b6
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4 changes: 2 additions & 2 deletions docs/configuration/adding_your_own.md
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Expand Up @@ -95,13 +95,13 @@ First, pull the image file where you have an internet connection:
> Make sure that this tag corresponds to the version of the pipeline that you're using
```bash
singularity pull --name nfcore-rnaseq-1.4.img docker://nfcore/rnaseq:1.4
singularity pull --name nfcore-rnaseq-1.0.img docker://nfcore/rnaseq:1.4
```

Then transfer this file and run the pipeline with this path:

```bash
nextflow run /path/to/nfcore-rnaseq -with-singularity /path/to/nfcore-rnaseq-1.4.img
nextflow run /path/to/nfcore-rnaseq -with-singularity /path/to/nfcore-rnaseq-1.0.img
```

### Bioconda
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4 changes: 2 additions & 2 deletions docs/configuration/local.md
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Expand Up @@ -36,11 +36,11 @@ First, pull the image file where you have an internet connection:
> Make sure that this tag corresponds to the version of the pipeline that you're using
```bash
singularity pull --name nfcore-rnaseq-1.4.img docker://nfcore/rnaseq:1.4
singularity pull --name nfcore-rnaseq-1.0.img docker://nfcore/rnaseq:1.4
```

Then transfer this file and run the pipeline with this path:

```bash
nextflow run /path/to/nfcore-rnaseq -with-singularity /path/to/nfcore-rnaseq-1.4.img
nextflow run /path/to/nfcore-rnaseq -with-singularity /path/to/nfcore-rnaseq-1.0.img
```
6 changes: 3 additions & 3 deletions docs/configuration/uppmax.md
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Expand Up @@ -24,7 +24,7 @@ First, pull the image file where you have an internet connection:
> Make sure that this tag corresponds to the version of the pipeline that you're using
```bash
singularity pull --name nfcore-rnaseq-1.4.img docker://nfcore/rnaseq:1.4
singularity pull --name nfcore-rnaseq-1.0.img docker://nfcore/rnaseq:1.4
pwd # Prints path to your singularity container
```

Expand All @@ -36,7 +36,7 @@ For example, with a `.zip` file:

```bash
unzip 1.4.zip
mv rnaseq-1.4 nfcore-rnaseq # rename the folder
mv rnaseq-1.0 nfcore-rnaseq # rename the folder
cd nfcore-rnaseq
pwd # Prints full path to your pipeline
```
Expand All @@ -46,7 +46,7 @@ and execute Nextflow with the path to the pipeline, as so:

```bash
cd /path/to/my/data/analysis
nextflow run /path/to/nfcore-rnaseq -with-singularity /path/to/singularity/nfcore-rnaseq-1.4.img
nextflow run /path/to/nfcore-rnaseq -with-singularity /path/to/singularity/nfcore-rnaseq-1.0.img
```

(Note that you'll need the other common flags such as `--reads` and `--genome` in addition to this command).
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