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Changelog entry for #8788 fix #1

Merged
merged 228 commits into from
May 13, 2022
Merged

Changelog entry for #8788 fix #1

merged 228 commits into from
May 13, 2022

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  • Change in CHANGELOG.md described in a way that is understandable for the average user (if applicable)
  • Tests created for changes (if applicable)
  • Manually tested changed features in running JabRef (always required)
  • Screenshots added in PR description (for UI changes)
  • Checked developer's documentation: Is the information available and up to date? If not, I outlined it in this pull request.
  • Checked documentation: Is the information available and up to date? If not, I created an issue at https://github.com/JabRef/user-documentation/issues or, even better, I submitted a pull request to the documentation repository.

k3KAW8Pnf7mkmdSMPHz27 and others added 30 commits January 28, 2022 17:58
Add JabRef on GitHub
* experiment with crossref

* Support CrossRef in CSL

Fixes JabRef#7378

Add new test
Fix existing test

* add removed options

* fix checkstyle

* fix checkstyle

* try to enrich entrytype
todo  need db context

* use bibdatabsecontext

* use either allFields of the entry type or the current fields
add tests for issue and number

modify example tobe able to distinguish between issue and number

* fix architecuture violation
fix tests

* fix architecture violation and checkstyle

* fuu checkstyle

* seems like checkstyle doesn't like the plus in front

* finally

* Move single menu entry to menu above

* test number and issue

* fix l10n

Co-authored-by: Oliver Kopp <[email protected]>
* Integrated loose methods

* Checkstyle

* Integrated FileHistory in GuiPreferences

* Integrated lastSelectedFetcher in GuiPreferences

* Integrated mergeDiffMode in GuiPreferences

* Fixed FileHistory

* Integrated warnAboutDuplicatesForImport in ImportExportPreferences

* Checkstyle
* fix rfc

* springer
Bumps [checkstyle](https://github.com/checkstyle/checkstyle) from 9.2.1 to 9.3.
- [Release notes](https://github.com/checkstyle/checkstyle/releases)
- [Commits](checkstyle/checkstyle@checkstyle-9.2.1...checkstyle-9.3)

---
updated-dependencies:
- dependency-name: com.puppycrawl.tools:checkstyle
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <[email protected]>

Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Bumps [xmlunit-matchers](https://github.com/xmlunit/xmlunit) from 2.8.4 to 2.9.0.
- [Release notes](https://github.com/xmlunit/xmlunit/releases)
- [Changelog](https://github.com/xmlunit/xmlunit/blob/main/RELEASE_NOTES.md)
- [Commits](xmlunit/xmlunit@v2.8.4...v2.9.0)

---
updated-dependencies:
- dependency-name: org.xmlunit:xmlunit-matchers
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <[email protected]>

Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
* Upgrade to jdk 17, cleaned up gradle.build

* Bump version

* Restore jacocoPrepare

* whitespace

* switched from adopt jdk to temurin jdk

* update gradle wrapper

* readd binary checksum

Co-authored-by: Siedlerchr <[email protected]>
* Introduce preference to disable fulltext indexing

Fixes JabRef#8468

* Improve l10n

* fix l10n

Co-authored-by: Oliver Kopp <[email protected]>
Co-authored-by: Siedlerchr <[email protected]>
76f23a2 Fix the order for conference papers in APA styles (JabRef#5875)
5125c43 Fix bibliography date sorting (JabRef#5876)
873df06 Change order of publisher and publisher-place (JabRef#5874)
8066c66 Fix independent for BioScientific Review
9cc567e Add AMA brackets w 2 dependents (JabRef#5871)
c33dd24 Create medicine-publishing.csl (JabRef#5866)
9cb9cdb Fishery&wildlife journals: Remove publishers for articles (JabRef#5868)
fbd9165 Update universitatsmedizin-gottingen.csl (JabRef#5864)
c563f03 Update mla8 and mla9 (JabRef#5859)
98d6a03 [ASM] Add DOI for preprints. (JabRef#5862)
05e7071 Create current-neurology-aktualnosci-neurologiczne.csl (JabRef#5858)
78d771d Update journal-of-clinical-neurophysiology.csl (JabRef#5857)

git-subtree-dir: buildres/csl/csl-styles
git-subtree-split: 76f23a2
4877f181b1 pt-PT lowercase months (JabRef#250)

git-subtree-dir: buildres/csl/csl-locales
git-subtree-split: 4877f181b1a962ea3e26d23f12d1acba3ccce347
Bumps [postgresql](https://github.com/pgjdbc/pgjdbc) from 42.3.1 to 42.3.2.
- [Release notes](https://github.com/pgjdbc/pgjdbc/releases)
- [Changelog](https://github.com/pgjdbc/pgjdbc/blob/master/CHANGELOG.md)
- [Commits](pgjdbc/pgjdbc@REL42.3.1...REL42.3.2)

---
updated-dependencies:
- dependency-name: org.postgresql:postgresql
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <[email protected]>

Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Bumps libreoffice from 7.2.5 to 7.3.0.

---
updated-dependencies:
- dependency-name: org.libreoffice:libreoffice
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <[email protected]>

Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
* Bump flowless from 0.6.7 to 0.6.8

Bumps [flowless](https://github.com/FXMisc/Flowless) from 0.6.7 to 0.6.8.
- [Release notes](https://github.com/FXMisc/Flowless/releases)
- [Changelog](https://github.com/FXMisc/Flowless/blob/master/CHANGELOG.md)
- [Commits](FXMisc/Flowless@v0.6.7...v0.6.8)

---
updated-dependencies:
- dependency-name: org.fxmisc.flowless:flowless
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <[email protected]>

* fix module name

Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Siedlerchr <[email protected]>
Bumps unoloader from 7.2.5 to 7.3.0.

---
updated-dependencies:
- dependency-name: org.libreoffice:unoloader
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <[email protected]>

Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
* Fix an issue opening console from menu

The change fixes an issue where opening the console at the current library caused a null reference exception. The original error occurred due to an explicit null value being passed into the action's constructor. The fix supplies the correct database to the action when called.

See: JabRef#8466

* Add unit test for opening console

Added Junit tests cases to verify that commands retrieve the correct database, and that the command defaults to the active database otherwise.

Tests cases added in response to a bug fix, see: JabRef#8466

* Update CHANGELOG.md

Update for style correction

* Update CHANGELOG.md
Bumps [classgraph](https://github.com/classgraph/classgraph) from 4.8.138 to 4.8.139.
- [Release notes](https://github.com/classgraph/classgraph/releases)
- [Commits](classgraph/classgraph@classgraph-4.8.138...classgraph-4.8.139)

---
updated-dependencies:
- dependency-name: io.github.classgraph:classgraph
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <[email protected]>

Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Bumps [tika-core](https://github.com/apache/tika) from 2.2.1 to 2.3.0.
- [Release notes](https://github.com/apache/tika/releases)
- [Changelog](https://github.com/apache/tika/blob/main/CHANGES.txt)
- [Commits](apache/tika@2.2.1...2.3.0)

---
updated-dependencies:
- dependency-name: org.apache.tika:tika-core
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <[email protected]>

Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Bumps [flexmark-ext-gfm-strikethrough](https://github.com/vsch/flexmark-java) from 0.62.2 to 0.64.0.
- [Release notes](https://github.com/vsch/flexmark-java/releases)
- [Commits](vsch/flexmark-java@0.62.2...0.64.0)

---
updated-dependencies:
- dependency-name: com.vladsch.flexmark:flexmark-ext-gfm-strikethrough
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <[email protected]>

Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Signed-off-by: gradle-update-robot <[email protected]>

Co-authored-by: gradle-update-robot <[email protected]>
eb97405 Create frattura-ed-integrita-strutturale-fracture-and-structural-inte… (JabRef#5877)
b33ebfc make journal names title case (JabRef#5900)
1c7ecf2 Update uclouvain-centre-charles-de-visscher-pour-le-droit-internation… (JabRef#5901)
1a2ea12 Create trinity-college-dublin-zoology-botany-environmental-sciences-h… (JabRef#5893)
6bd742c Update harvard-anglia-ruskin-university.csl (JabRef#5840)
bc8f258 Update chicago-author-date.csl (JabRef#5836)
80aded6 Fix missing prefix for URL field (JabRef#5894)
b850a0d Update american-society-of-civil-engineers.csl (JabRef#5891)
94c1cb3 Update deutsche-gesellschaft-fur-psychologie.csl (JabRef#5861)
f66f384 Update universite-cheikh-anta-diop-faculte-de-medecine-de-pharmacie-et-dodontologie.csl (JabRef#5863)
82cf786 Update and rename acta-psychiatrica-scandinavica.csl to dependent/acta-psychiatrica-scandinavica.csl (JabRef#5879)

git-subtree-dir: buildres/csl/csl-styles
git-subtree-split: eb97405
github actions and others added 27 commits May 1, 2022 02:54
969d9567ac copied .github/workflows/sheldon.yaml from styles

git-subtree-dir: buildres/csl/csl-locales
git-subtree-split: 969d9567ac3d69cdb5eccdaa9143a57d44168016
Bumps org.openjfx.javafxplugin from 0.0.12 to 0.0.13.

---
updated-dependencies:
- dependency-name: org.openjfx.javafxplugin
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <[email protected]>

Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Bumps [postgresql](https://github.com/pgjdbc/pgjdbc) from 42.3.3 to 42.3.4.
- [Release notes](https://github.com/pgjdbc/pgjdbc/releases)
- [Changelog](https://github.com/pgjdbc/pgjdbc/blob/master/CHANGELOG.md)
- [Commits](pgjdbc/pgjdbc@REL42.3.3...REL42.3.4)

---
updated-dependencies:
- dependency-name: org.postgresql:postgresql
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <[email protected]>

Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
* Refactor Snackbar to Notifications

* Remove Threshold limit

* Update Changelog

* Fix style in changelog

* Revert some changes in Changelog.md

Co-authored-by: Yogeshvar Senthilkumar <[email protected]>
Co-authored-by: Carl Christian Snethlage <[email protected]>
Restrict the GitHub token permissions only to the required ones; this way, even if the attackers will succeed in compromising your workflow, they won’t be able to do much.

- Included permissions for the action. https://github.com/ossf/scorecard/blob/main/docs/checks.md#token-permissions

https://docs.github.com/en/actions/using-workflows/workflow-syntax-for-github-actions#permissions

https://docs.github.com/en/actions/using-jobs/assigning-permissions-to-jobs

[Keeping your GitHub Actions and workflows secure Part 1: Preventing pwn requests](https://securitylab.github.com/research/github-actions-preventing-pwn-requests/)

Signed-off-by: nathannaveen <[email protected]>
* Update README.md

* Fix invisible text in notification bar

- Also restyled it a bit

* Use better messages in notification bar when library is successfully exported

* Style notification bar for dark theme

* Increase notification duration for library exportation event to 10 seconds

* Fixup fork

* Update CHANGELOG.md

* Revert "Increase notification duration for library exportation event to 10 seconds"

This reverts commit 32ecfd8.
Bumps [tika-core](https://github.com/apache/tika) from 2.3.0 to 2.4.0.
- [Release notes](https://github.com/apache/tika/releases)
- [Changelog](https://github.com/apache/tika/blob/main/CHANGES.txt)
- [Commits](apache/tika@2.3.0...2.4.0)

---
updated-dependencies:
- dependency-name: org.apache.tika:tika-core
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <[email protected]>

Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Bumps libreoffice from 7.3.2 to 7.3.3.

---
updated-dependencies:
- dependency-name: org.libreoffice:libreoffice
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <[email protected]>

Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Bumps [postgresql](https://github.com/pgjdbc/pgjdbc) from 42.3.4 to 42.3.5.
- [Release notes](https://github.com/pgjdbc/pgjdbc/releases)
- [Changelog](https://github.com/pgjdbc/pgjdbc/blob/master/CHANGELOG.md)
- [Commits](pgjdbc/pgjdbc@REL42.3.4...REL42.3.5)

---
updated-dependencies:
- dependency-name: org.postgresql:postgresql
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <[email protected]>

Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
…f#8776)

Bumps [WyriHaximus/github-action-wait-for-status](https://github.com/WyriHaximus/github-action-wait-for-status) from 1.5 to 1.6.
- [Release notes](https://github.com/WyriHaximus/github-action-wait-for-status/releases)
- [Commits](WyriHaximus/github-action-wait-for-status@v1.5...v1.6)

---
updated-dependencies:
- dependency-name: WyriHaximus/github-action-wait-for-status
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <[email protected]>

Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
…JabRef#8680)

Co-authored-by: Oliver Kopp <[email protected]>
Co-authored-by: Christoph <[email protected]>
Co-authored-by: Carl Christian Snethlage <[email protected]>
* Update to gradle 7.4.2 and jdk18

* Update checksum

* Fixed checksum

* Switch from orcle to liberica

* Switch from liberica to temurin

Co-authored-by: Oliver Kopp <[email protected]>
* Fix scrollbar shows up needlessly in group panel

* Update CHANGELOG.md

* Change solution to fix unneccesary scrollbar in group panel

* Remove first solution from GroupTree.css
* Make methods of XmpUtilWriter non-static

* Fix typos

* Rewrite test to use builder (and no strange global variables)

* Use "List.of"

* XMP writing does not write the `file` field.

* Have test checking for conent (and not only size)

* Remove "static" in XmpUtilReader, more comments

* Checkstyle fix

* Small fix

* More checkstyle

* Remove iterating on tuples

* Implement brace removal

* Fix checkstyle

* Add missing CHANGELOG.md entry

* "BibTex" -> "BibTeX"

* Make use of xmpPreferences.getKeywordSeparator()

* Streamline comments

* Writing BibTeX keeps the BibTeX code as is

* Remove LaTeX content also in DI fields

* Remove oboslete imports

* Switch to enhanced switch statement

* Apply simple ide suggestions

* checkstyle

* small code style

* Moved XmpPreferences argument to constructor,
applied more ide suggestions

* Order changed

* Text block

Co-authored-by: Christoph <[email protected]>
Co-authored-by: Carl Christian Snethlage <[email protected]>

* Fix writing when privacy data is present

Co-authored-by: Christoph <[email protected]>
Co-authored-by: Carl Christian Snethlage <[email protected]>

* Fix expected

Co-authored-by: Christoph <[email protected]>
Co-authored-by: Carl Christian Snethlage <[email protected]>

* Fix

Co-authored-by: Christoph <[email protected]>
Co-authored-by: Carl Christian Snethlage <[email protected]>

* More structure in the test

* fix checkstyle

Co-authored-by: Carl Christian Snethlage <[email protected]>
Co-authored-by: Siedlerchr <[email protected]>
@falschgeldkind falschgeldkind changed the title Patch 1 Changelog entry for #8788 fix May 13, 2022
@falschgeldkind falschgeldkind merged commit 2b8cbfc into main May 13, 2022
@falschgeldkind falschgeldkind deleted the patch-1 branch May 24, 2022 13:07
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