Skip to content

Commit

Permalink
Smaller fixes for packaging (#6)
Browse files Browse the repository at this point in the history
* Update setup.py

- correct repo url
- tensorflow as an extra requirement
- add bigfish as a `find_package`

Co-authored-by: Wei Ouyang <[email protected]>
  • Loading branch information
muellerflorian and oeway authored May 5, 2020
1 parent 33ceab1 commit 02c0761
Show file tree
Hide file tree
Showing 2 changed files with 9 additions and 3 deletions.
1 change: 1 addition & 0 deletions bigfish/__init__.py
Original file line number Diff line number Diff line change
@@ -0,0 +1 @@

11 changes: 8 additions & 3 deletions setup.py
Original file line number Diff line number Diff line change
Expand Up @@ -10,7 +10,7 @@

# Package meta-data.
VERSION = 1.0
DESCRIPTION = 'Toolbox for cell FISH images.'
DESCRIPTION = 'Toolbox for the analysis of smFISH images.'

# Package abstract dependencies
REQUIRES = [
Expand All @@ -19,14 +19,15 @@
'scikit-learn >= 0.20.2',
'scikit-image >= 0.14.2',
'scipy >= 1.2.0',
'tensorflow >= 1.12.0, < 2.0',
'matplotlib >= 3.0.2',
'pandas >= 0.24.0',
'numba >= 0.37.0',
'umap-learn >= 0.3.9',
'mrc >= 0.1.5'
]

DEEPLEARNING_REQUIREMENTS = ['tensorflow >= 1.12.0, < 2.0']

# Long description of the package
with open("README.md", "r") as f:
LONG_DESCRIPTION = f.read()
Expand Down Expand Up @@ -56,10 +57,14 @@
long_description_content_type="text/markdown",
author='Arthur Imbert',
author_email='[email protected]',
url='https://github.com/Henley13/big-fish',
url='https://github.com/fish-quant/big-fish',
packages=find_packages(),
license='MIT',
python_requires='>=3.6.0',
install_requires=REQUIRES,
extras_require={
'deeplearning': DEEPLEARNING_REQUIREMENTS
},
classifiers=CLASSIFIERS
)

0 comments on commit 02c0761

Please sign in to comment.